1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tatcctggcattgctcatcagtgccatgaaaaactgtggctcagacagagattcttgtagagttctaaacaattgtatatatatggactttgcatcacagGCTTCAGGGTATTACCAACTCCATTTCACGATTACCTACGCACCGACGGCGTATGGAGGCGTTAATGAAGAACTTACAAGCGTATATGGAGTCACGCTCA
species | Physcomitrella patens |
transcript | PP1S47_201V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGACCTGAAGATGGTGTAAGAAAAGGAGAATTACAAGCCATGGCCCGACG GCTTCAGGGTATTACCAACTCCATTTCACGATTACCTACGCACCGACGGCGEST: gi|37828469|gb|BJ586481.1|BJ586481
genomic: GGACCTGAAGATGGTGTAAGAAAAGGAGAATTACAAGCCATGGCCCGACGgtaagcctgc ... tgcatcacagGCTTCAGGGTATTACCAACTCCATTTCACGATTACCTACGCACCGACGGCG
EST: GGACNTGAAGATGGTGTAAGAAAAGGAGAATTACAAGCCATGGCCCGACG GCTTCAGGGTATTACCAACTCCATTTCACGATTACCTACGCACCGACGGCGEST: gi|162197205|gb|FC372518.1|FC372518
genomic: GGACCTGAAGATGGTGTAAGAAAAGGAGAATTACAAGCCATGGCCCGACGgtaagcctgc ... tgcatcacagGCTTCAGGGTATTACCAACTCCATTTCACGATTACCTACGCACCGACGGCG
EST: GGACCTGAAGATGGTGTAAGAAAAGGAGAATTACAAGCCATGGCCCGACG GCTTCAGGGTATTACCAACTCCATTTCACGATTACCTACGCACCGACGGCGEST: gi|162158354|gb|FC334773.1|FC334773
genomic: GGACCTGAAGATGGTGTAAGAAAAGGAGAATTACAAGCCATGGCCCGACGgtaagcctgc ... tgcatcacagGCTTCAGGGTATTACCAACTCCATTTCACGATTACCTACGCACCGACGGCG
EST: GGACCTGAAGATGGTGTAAGAAAAGGAGAATTACAAGCCATGGCCCGACG GCTTCAGGGTATTACCAACTCCATTTCACGATTACCTACGCACCGACGGCGEST: gi|162159629|gb|FC335807.1|FC335807
genomic: GGACCTGAAGATGGTGTAAGAAAAGGAGAATTACAAGCCATGGCCCGACGgtaagcctgc ... tgcatcacagGCTTCAGGGTATTACCAACTCCATTTCACGATTACCTACGCACCGACGGCG
EST: GGACCTGAAGATGGTGTAAGAAAAGGAGAATTACAAGCCATGGCCCGACG GCTTCAGGGTATTACCAACTCCATTTCACGATTACCTACGCACCGACGGCGEST: gi|162197206|gb|FC372519.1|FC372519
genomic: GGACCTGAAGATGGTGTAAGAAAAGGAGAATTACAAGCCATGGCCCGACGgtaagcctgc ... tgcatcacagGCTTCAGGGTATTACCAACTCCATTTCACGATTACCTACGCACCGACGGCG
EST: GGACCTGAAGATGGTGTAAGAAAAGGAGAATTACAAGCCATGGCCCGACG GCTTCAGGGTATTACCAACTCCATTTCACGATTACCTACGCACCGACGGCG
genomic: GGACCTGAAGATGGTGTAAGAAAAGGAGAATTACAAGCCATGGCCCGACGgtaagcctgc ... tgcatcacagGCTTCAGGGTATTACCAACTCCATTTCACGATTACCTACGCACCGACGGCG
cagagattcttgtagagttctaaacaattgtatatatatggactttgcatcacagGCTTCAGGGTATTACCAACTCCATTTCACGATTACCTACGCACCGACGGCGTATGGAGGCGTTAATGAAGAACTTACAAGCGTATATGGAGTCACGCTCA
ttctaaa putative branch site (score: 2)
ttctaaacaattgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcctggcattgctcatcagtgccatgaaaaactgtggctcagacagagattcttgtagagttctaaacaattgtatatatatggactttgcatcacagGCTTCAGGGTATTACCAACTCCATTTCACGATTACCTACGCACCGACGGCGTATGGAGGCGTTAATGAAGAACTTACAAGCGTATATGGAGTCACGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC