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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctacgaagcattgaaaacatgtactcttgaccgattccgttctgttcaggttgtgtgtaaaaatatcgatttttcagcccgggacttggaatttgtgaccggatcattccttactgtatgctgttgctacagGATATCAAGAAGGTACCTGAAGACATCAAAGAATTGAAACCAACATTGTTTGTTGGTGTTCCTCGTGTCTTCGACAGGCTAACTACAG

Basic information

species Physcomitrella patens
transcript PP1S47_161V6.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100365584|gb|BY966669.1|BY966669
EST:     CTGAGGAGATGTTTGTTTTTATTGGCGGTTCTATTGGATTCTGGCAAGGG                         GATATCAAGAAGGTACCTGAAGACATCAAAGAATTGAAACCAACATTGTTT
genomic: CTGAGGAGATGTTTGTTTTTATTGGCGGTTCTATTGGATTCTGGCAAGGGgtatgtctac ... gttgctacagGATATCAAGAAGGTACCTGAAGACATCAAAGAATTGAAACCAACATTGTTT
EST: gi|162194189|gb|FC371040.1|FC371040
EST:     CTGAGGAGATGTTTGTTTTTATTGGCGGTTCTATTGGATTCTGGCAAGGG                         GATATCAAGAAGGTACCTGAAGACATCAA
genomic: CTGAGGAGATGTTTGTTTTTATTGGCGGTTCTATTGGATTCTGGCAAGGGgtatgtctac ... gttgctacagGATATCAAGAAGGTACCTGAAGACATCAA
EST: gi|162151930|gb|FC328891.1|FC328891
EST:     CTGAGGAGATGTTTGTTTTTATTGGCGGTTCTATTGGATTCTGGCAAGGG                         GATATCAAGAAGGTACCTGAAGACATCAAAGAATTGAAACCAACATTGTTT
genomic: CTGAGGAGATGTTTGTTTTTATTGGCGGTTCTATTGGATTCTGGCAAGGGgtatgtctac ... gttgctacagGATATCAAGAAGGTACCTGAAGACATCAAAGAATTGAAACCAACATTGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccgggacttggaatttgtgaccggatcattccttactgtatgctgttgctacagGATATCAAGAAGGTACCTGAAGACATCAAAGAATTGAAACCAACATTGTTTGTTGGTGTTCCTCGTGTCTTCGACAGGCTAACTACAG
                              tccttac  putative branch site (score: 2)
            aatttgt  TA-rich tract