1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tctgaatcaatctaattattttactcttgttgctgtatttgaccaatgaacggtgcgaaaactgttgtaactcactggataccttgattgtgatggccagTTATTGAATGGTATGAAGCATGGTTGCAGCATATTGGTGTCATCCATTCCCAAGTCAACTAAGGCCGCCCTTTCGCTTCGGGAACCTTCAGAG
species | Physcomitrella patens |
transcript | PP1S47_110V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCCTACCTGTATATATTGGAGATGATCGTACAGACGAGGATGCTTTCAAG TTATTGAATGGTATGAAGCATGGTTGCAGCATATTGGTGTCATCCATTCCCEST: gi|37821037|gb|BJ579103.1|BJ579103
genomic: TCCTACCTGTATATATTGGAGATGATCGTACAGACGAGGATGCTTTCAAGgtaccaatac ... tgatggccagTTATTGAATGGTATGAAGCATGGTTGCAGCATATTGGTGTCATCCATTCCC
EST: AGGATGCTTTCAAG TTATTGAATGGTATGAAGCATGGTTGCAGCATATTGGTGTCATCCATTCCCEST: gi|100438589|gb|BY980033.1|BY980033
genomic: AGGATGCTTTCAAGgtaccaatac ... tgatggccagTTATTGAATGGTATGAAGCATGGTTGCAGCATATTGGTGTCATCCATTCCC
EST: TCCTACCTGTATATATTGGAGATGATCGTACAGACGAGGATGCTTTCAAG TTATTGAATGGTATGAAGCATGGTTGCAGCATATTGGTGTCATCCATTCCCEST: gi|100410934|gb|BY956255.1|BY956255
genomic: TCCTACCTGTATATATTGGAGATGATCGTACAGACGAGGATGCTTTCAAGgtaccaatac ... tgatggccagTTATTGAATGGTATGAAGCATGGTTGCAGCATATTGGTGTCATCCATTCCC
EST: TCCTACCTGTATATATTGGAGATGATCGTACAGACGAAGATGCTTTCAAG TTATTGAATGGTATGAAGCATGGTTGCAGCATATTGGTGTCATCCATTCCC
genomic: TCCTACCTGTATATATTGGAGATGATCGTACAGACGAGGATGCTTTCAAGgtaccaatac ... tgatggccagTTATTGAATGGTATGAAGCATGGTTGCAGCATATTGGTGTCATCCATTCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgaatcaatctaattattttactcttgttgctgtatttgaccaatgaacggtgcgaaaactgttgtaactcactggataccttgattgtgatggccagTTATTGAATGGTATGAAGCATGGTTGCAGCATATTGGTGTCATCCATTCCCAAGTCAACTAAGGCCGCCCTTTCGCTTCGGGAACCTTCAGAG
- - - - - - - - - - - - - - - tgctgta