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gtttctagtcattttgtatttcccgtctaatctttgaatacatggataattatagtgagcaatgctcgattctacaagaaatctcttaccattgtactgaattgcccggcttatttattgtgtctagatttgtttcagtcttgctgttggcggacattatgtacgtgtaaattgatggagcatcatttttccgcagGTGAGGCTAAAACGTTATTTGGAGATGAGGGGAGCTGATGGTGGTCCATGGCGACGATTGTGTGCATTGCCTGCATTTTGG
species | Physcomitrella patens |
transcript | PP1S479_14V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGCCTACACTGAGCGATTGGGAGAATCACTTAACAACAATATTTCCCGAG GTGAGGCTAAAACGTTATTTGGAGATGAGGGGAGCTGATGGTGGTCCATGGEST: gi|67725923|gb|BJ976182.1|BJ976182
genomic: GGCCTACACTGAGCGATTGGGAGAATCACTTAACAACAATATTTCCCGAGgtttctagtc ... ttttccgcagGTGAGGCTAAAACGTTATTTGGAGATGAGGGGAGCTGATGGTGGTCCATGG
EST: GGCCTACACTGAGCGATTGGGAGAATCACTTAACAACAATATTTCCCGAG GTGAGGCTAAAACGTTATTTGGAGATGAGGGGAGCTGATGGTGGTCCATGGEST: gi|37840181|gb|BJ598189.1|BJ598189
genomic: GGCCTACACTGAGCGATTGGGAGAATCACTTAACAACAATATTTCCCGAGgtttctagtc ... ttttccgcagGTGAGGCTAAAACGTTATTTGGAGATGAGGGGAGCTGATGGTGGTCCATGG
EST: GGCNTACACTGAGCGATTGGGAGAATCACTTAACAACAATATTTCCCGAG GTGAGGCTAAAACGTTATTTGGAGATGAGGGGAGCTGATGGTGGTCCATGGEST: gi|208346034|gb|DC921279.1|DC921279
genomic: GGCCTACACTGAGCGATTGGGAGAATCACTTAACAACAATATTTCCCGAGgtttctagtc ... ttttccgcagGTGAGGCTAAAACGTTATTTGGAGATGAGGGGAGCTGATGGTGGTCCATGG
EST: GGCCTACACTGAGCGATTGGGAGAATCACTTAACAACAATATTTCCCGAG GTGAGGCTAAAACGTTATTTGGAGATGAGGGGAGCTGATGGTGGTCCATGGEST: gi|162182551|gb|FC357526.1|FC357526
genomic: GGCCTACACTGAGCGATTGGGAGAATCACTTAACAACAATATTTCCCGAGgtttctagtc ... ttttccgcagGTGAGGCTAAAACGTTATTTGGAGATGAGGGGAGCTGATGGTGGTCCATGG
EST: GGCCTACACTGAGCGATTGGGAGAATCACTTAACAACAATATTTCCCGAG GTGAGGCTAAAACGTTATTTGGAGATGAGGGGAGCTGATGGTGGTCCATGGEST: gi|162186778|gb|FC362814.1|FC362814
genomic: GGCCTACACTGAGCGATTGGGAGAATCACTTAACAACAATATTTCCCGAGgtttctagtc ... ttttccgcagGTGAGGCTAAAACGTTATTTGGAGATGAGGGGAGCTGATGGTGGTCCATGG
EST: GGCCTACACTGAGCGATTGGGAGAATCACTTAACAACAATATTTCCCGAG GTGAGGCTAAAACGTTATTTGGAGATGAGGGGAGCTGATGGTGGTCCATGGEST: gi|18339055|gb|BJ171081.1|BJ171081
genomic: GGCCTACACTGAGCGATTGGGAGAATCACTTAACAACAATATTTCCCGAGgtttctagtc ... ttttccgcagGTGAGGCTAAAACGTTATTTGGAGATGAGGGGAGCTGATGGTGGTCCATGG
EST: GAATCACTTAACAACAATATTTCCCCGAG GTGAGGCTAAAACGTTATTTGNAGATGAGGGGAGCTGATGGTGGTCCATGEST: gi|162239289|gb|FC415388.1|FC415388
genomic: GAATCACTTAACAACAATATTT-CCCGAGgtttctagtc ... ttttccgcagGTGAGGCTAAAACGTTATTTGGAGATGAGGGGAGCTGATGGTGGTCCATG
EST: GGCCTACACTGAGCGATTGGGAGAATCACTTAACAACAATATTTCCCGAG GTGAGGCTAAAACGTTATTTGGAGATGAGGGGAGCTGATGGTGGTCCATGGEST: gi|67725390|gb|BJ975649.1|BJ975649
genomic: GGCCTACACTGAGCGATTGGGAGAATCACTTAACAACAATATTTCCCGAGgtttctagtc ... ttttccgcagGTGAGGCTAAAACGTTATTTGGAGATGAGGGGAGCTGATGGTGGTCCATGG
EST: GGCCTACACTGAGCGATTGGGAGAATCACTTAACAACAATATTTCCCGAG GTGAGGCTAAAACGTTATTTGGAGATGAGGGGAGCTGATGGTGGTCCATGGEST: gi|37840845|gb|BJ598853.1|BJ598853
genomic: GGCCTACACTGAGCGATTGGGAGAATCACTTAACAACAATATTTCCCGAGgtttctagtc ... ttttccgcagGTGAGGCTAAAACGTTATTTGGAGATGAGGGGAGCTGATGGTGGTCCATGG
EST: GGCCTACACTGAGCGATTGGGAGAATCACTTAACAACAATATTTCCCGAG GTGAGGCTAAAACGTTATTTGGAGATGAGGGGAGCTGATGGTGGTCCATGGEST: gi|162239290|gb|FC415389.1|FC415389
genomic: GGCCTACACTGAGCGATTGGGAGAATCACTTAACAACAATATTTCCCGAGgtttctagtc ... ttttccgcagGTGAGGCTAAAACGTTATTTGGAGATGAGGGGAGCTGATGGTGGTCCATGG
EST: GGCCTACACTGAGCGATTGGGAGAATCACTTAACAACAATATTTCCCGAG GTGAGGCTAAAACGTTATTTG
genomic: GGCCTACACTGAGCGATTGGGAGAATCACTTAACAACAATATTTCCCGAGgtttctagtc ... ttttccgcagGTGAGGCTAAAACGTTATTTG
tgctgttggcggacattatgtacgtgtaaattgatggagcatcatttttccgcagGTGAGGCTAAAACGTTATTTGGAGATGAGGGGAGCTGATGGTGGTCCATGGCGACGATTGTGTGCATTGCCTGCATTTTGG
aattgat putative branch site (score: 6)
tcatttttcc putative PPT
taaattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttctagtcattttgtatttcccgtctaatctttgaatacatggataattatagtgagcaatgctcgattctacaagaaatctcttaccattgtactgaattgcccggcttatttattgtgtctagatttgtttcagtcttgctgttggcggacattatgtacgtgtaaattgatggagcatcatttttccgcagGTGAGGCTAAAACGTTATTTGGAGATGAGGGGAGCTGATGGTGGTCCATGGCGACGATTGTGTGCATTGCCTGCATTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG