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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttcagattaattgtcttctggtcctgttaactaccattgtttgctcagagttattgtggtgttccaaatgtagtcaccatgcatctttcccttctgtagGTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAGAAGGATTACTGCGTTGGTGACGTTATTTCACTGCTTTGGTTCAGGCGTAGTTT

Basic information

species Physcomitrella patens
transcript PP1S46_63V6.3
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67574889|gb|BJ947713.1|BJ947713
EST:     AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAG                         GTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAGAAGG
genomic: AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAGgtacctgaga ... ccttctgtagGTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAGAAGG
EST: gi|208366526|gb|DC955602.1|DC955602
EST:     AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAG                         GTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAGAAGG
genomic: AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAGgtacctgaga ... ccttctgtagGTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAGAAGG
EST: gi|162197631|gb|FC374465.1|FC374465
EST:     AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAG                         GTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAG
genomic: AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAGgtacctgaga ... ccttctgtagGTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAG
EST: gi|162150458|gb|FC326106.1|FC326106
EST:     AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAG                         GTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAGAAGG
genomic: AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAGgtacctgaga ... ccttctgtagGTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAGAAGG
EST: gi|162196012|gb|FC372183.1|FC372183
EST:     AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAG                         GTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAGAAGG
genomic: AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAGgtacctgaga ... ccttctgtagGTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAGAAGG
EST: gi|100385297|gb|BY950889.1|BY950889
EST:     AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAG                         GTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAGAAGG
genomic: AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAGgtacctgaga ... ccttctgtagGTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAGAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagagttattgtggtgttccaaatgtagtcaccatgcatctttcccttctgtagGTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAGAAGGATTACTGCGTTGGTGACGTTATTTCACTGCTTTGGTTCAGGCGTAGTTT
                                   tgcatctttcccttct  CT-rich tract
      ttattgt  TA-rich tract