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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taccttctgaacgtatgcactagtttttcagtcaccatgtcgctgttgagcaaaggtcgttgtggctgaagttggttatacctaactactttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAACACCGCATTGCCTATCTCAGCCTATCAG

Basic information

species Physcomitrella patens
transcript PP1S450_21V6.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208357191|gb|DC926538.1|DC926538
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|7583276|gb|AW699440.1|AW699440
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162218487|gb|FC395064.1|FC395064
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|208353431|gb|DC918487.1|DC918487
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162234869|gb|FC410642.1|FC410642
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|37828958|gb|BJ586970.1|BJ586970
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162185929|gb|FC361029.1|FC361029
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|37852710|gb|BJ610718.1|BJ610718
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162268622|gb|FC443676.1|FC443676
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162232564|gb|FC408400.1|FC408400
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162184165|gb|FC359639.1|FC359639
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162176322|gb|FC353507.1|FC353507
EST:     CTTTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|208397366|gb|DC916320.1|DC916320
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|37827165|gb|BJ585177.1|BJ585177
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|37822149|gb|BJ580215.1|BJ580215
EST:     CTCTGATCGAGACAGGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|208380828|gb|DC923310.1|DC923310
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|67727441|gb|BJ977700.1|BJ977700
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162265940|gb|FC442943.1|FC442943
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|208388243|gb|DC945575.1|DC945575
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162232563|gb|FC408399.1|FC408399
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|37821562|gb|BJ579628.1|BJ579628
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162227004|gb|FC403361.1|FC403361
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTTTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgagcaaaggtcgttgtggctgaagttggttatacctaactactttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAACACCGCATTGCCTATCTCAGCCTATCAG
                                  acctaac  putative branch site (score: 2)
                                           ctttgttc  putative PPT
                              ttata  TA-rich tract