1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagtatatagtaaaataaacgatcagtgctaggtagttctgtcacgtttttcaagatcataaatcacctttcgattttattagaggtcctacgtctatactggatttaacctctttttctctgtgtaagcagCACAAGCATGTGTTGGAAGACACACAAAAGAACCACGATTTGCTGGGTCAGGCAAAGGTTGCGGATGGCCACTGCAAAGCTATTTTGAACAGGCTATCGA
species | Physcomitrella patens |
transcript | PP1S42_185V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGCACCATTCATGAACTTAAAGAAGACTGTTAAGGCTTTGAGATTGAAG CACAAGCATGTGTTGGAAGACACACAAAAGAACCACGATTTGCTGGGTCAGEST: gi|15729409|gb|BI741301.1|BI741301
genomic: TTGCACCATTCATGAACTTAAAGAAGACTGTTAAGGCTTTGAGATTGAAGgtaagtatat ... gtgtaagcagCACAAGCATGTGTTGGAAGACACACAAAAGAACCACGATTTGCTGGGTCAG
EST: TTGCACCATTCATGAACTTAAAGAAGACTGTTAAGGCTTTGAGATTGAAG CACAAGCATGTGTTGGAAGACACACAAAAGAACCACGATTTGCTGGGTCAGEST: gi|7287401|gb|AW599888.1|AW599888
genomic: TTGCACCATTCATGAACTTAAAGAAGACTGTTAAGGCTTTGAGATTGAAGgtaagtatat ... gtgtaagcagCACAAGCATGTGTTGGAAGACACACAAAAGAACCACGATTTGCTGGGTCAG
EST: TTGCACCATTCATGAACTTAAAGAAGACTGTTAAGGCTTTGAGATTGAAG CACAAGCATGTGTTGGAAGACACACAAAAGAACCACGATTTGCTGGGTCAGEST: gi|162153817|gb|FC329948.1|FC329948
genomic: TTGCACCATTCATGAACTTAAAGAAGACTGTTAAGGCTTTGAGATTGAAGgtaagtatat ... gtgtaagcagCACAAGCATGTGTTGGAAGACACACAAAAGAACCACGATTTGCTGGGTCAG
EST: TTGCACCATTCATGAACTTAAAGAAGACTGTTAAGGCTTTGAGATTGAAG CACAAGCATGTGTTGGAAGACACACAAAAGAACCACGATTTGCTGGGTCAGEST: gi|208364795|gb|DC954497.1|DC954497
genomic: TTGCACCATTCATGAACTTAAAGAAGACTGTTAAGGCTTTGAGATTGAAGgtaagtatat ... gtgtaagcagCACAAGCATGTGTTGGAAGACACACAAAAGAACCACGATTTGCTGGGTCAG
EST: TTGCACCATTCATGAACTTAAAGAAGACTGTTAAGGCTTTGAGATTGAAG CACAAGCATGTGTTGGAAGACACACAAAAGAACCACGATTTGCTGGGTCAGEST: gi|37835031|gb|BJ593043.1|BJ593043
genomic: TTGCACCATTCATGAACTTAAAGAAGACTGTTAAGGCTTTGAGATTGAAGgtaagtatat ... gtgtaagcagCACAAGCATGTGTTGGAAGACACACAAAAGAACCACGATTTGCTGGGTCAG
EST: TTGCACCATTCATGAACTTAAAGAAGACTGTTAAGGCTTTGAGATTGAAG CACAAGCATGTGTTGGAAGACACACAAAAGAACCACGATTTGCTGGGTCAGEST: gi|162165905|gb|FC340956.1|FC340956
genomic: TTGCACCATTCATGAACTTAAAGAAGACTGTTAAGGCTTTGAGATTGAAGgtaagtatat ... gtgtaagcagCACAAGCATGTGTTGGAAGACACACAAAAGAACCACGATTTGCTGGGTCAG
EST: TTGCACCATTCATGAACTTAAAGAAGACTGTTAAGGCTTTGAGATTGAAG CACAAGCATGTGTTGGAAGACACACAAAAGAACCACGATTTGCTGGGTCAG
genomic: TTGCACCATTCATGAACTTAAAGAAGACTGTTAAGGCTTTGAGATTGAAGgtaagtatat ... gtgtaagcagCACAAGCATGTGTTGGAAGACACACAAAAGAACCACGATTTGCTGGGTCAG
tattagaggtcctacgtctatactggatttaacctctttttctctgtgtaagcagCACAAGCATGTGTTGGAAGACACACAAAAGAACCACGATTTGCTGGGTCAGGCAAAGGTTGCGGATGGCCACTGCAAAGCTATTTTGAACAGGCTATCGA
atttaac putative branch site (score: 4)
cctctttttctctgtg CT-rich tract
atttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatatagtaaaataaacgatcagtgctaggtagttctgtcacgtttttcaagatcataaatcacctttcgattttattagaggtcctacgtctatactggatttaacctctttttctctgtgtaagcagCACAAGCATGTGTTGGAAGACACACAAAAGAACCACGATTTGCTGGGTCAGGCAAAGGTTGCGGATGGCCACTGCAAAGCTATTTTGAACAGGCTATCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG