Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtaccatgatcctcgtattatttattggctctatcgactgcggtcttgtaaatgacttgcattaaatcaccatatctgagcctatgagtattaatcatcttcaattttttttttttgaactttcctgacttcctatgatcacctgtatcctacacagTCGTCGAACAGAAAAATACTTCAGACATGGGAGGGAATTAAACTGGCCTGAAGGGGCAGTGTCAAGGGAAAGTATTCGAGCCGTGAGAAGATTACCCAGA

Basic information

species Physcomitrella patens
transcript PP1S425_6V6.2
intron # 10
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattttttttttttgaactttcctgacttcctatgatcacctgtatcctacacagTCGTCGAACAGAAAAATACTTCAGACATGGGAGGGAATTAAACTGGCCTGAAGGGGCAGTGTCAAGGGAAAGTATTCGAGCCGTGAGAAGATTACCCAGA
                    tcctgac  putative branch site (score: 2)
 tttttttttgaacttt  TA-rich tract