1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtatgtcgttaaaagatgattatgtgcttttggactttcgtggagtgaaggtttttgaattatagctactcacatcgtggctcattaagttgctacaagcctgagtaagcatatctttttctatttgttggatgtggcaattgctgatgtttgtgttggtggttcgcttcagTACGTAAAGCAAACGCTTGCTGAATGCAAAGATCCATTGGAAAAACAGCAGCTGTGCTACATTTTGGGCAGACAG
species | Physcomitrella patens |
transcript | PP1S414_22V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GCAAATATCCAGAGGCGTTGCGAGTTGCTTTAAGAATGGGAAATACACAG TACGTAAAGCAAACGCTTGCTGAATGCAAAGATCCATTGGAAAAACAGCAGEST: gi|162172804|gb|FC348393.1|FC348393
genomic: GCAAATATCCAGAGGCGTTGCGAGTTGCTTTAAGAATGGGAAATACACAGgtatgtcgtt ... ttcgcttcagTACGTAAAGCAAACGCTTGCTGAATGCAAAGATCCATTGGAAAAACAGCAG
EST: GCAAATATCCAGAGGCGTTGCGAGTTGCTTTAAGAATGGGAAATACACAG TACGTAAAGCAAACGCTTGCTGAATGCAAAGATCCATTGGAAAAACAGCAGEST: gi|18374549|gb|BJ206127.1|BJ206127
genomic: GCAAATATCCAGAGGCGTTGCGAGTTGCTTTAAGAATGGGAAATACACAGgtatgtcgtt ... ttcgcttcagTACGTAAAGCAAACGCTTGCTGAATGCAAAGATCCATTGGAAAAACAGCAG
EST: GCAAATATCCAGAGGCGTTGCGAGTTGCTTTAAGAATGGGAAATACACAG TACGTAAAGCAAACGCTTGCTGAATGCAAAGATCCATTGGAAAAACAGCAGEST: gi|162196706|gb|FC373826.1|FC373826
genomic: GCAAATATCCAGAGGCGTTGCGAGTTGCTTTAAGAATGGGAAATACACAGgtatgtcgtt ... ttcgcttcagTACGTAAAGCAAACGCTTGCTGAATGCAAAGATCCATTGGAAAAACAGCAG
EST: GCAAATATCCAGAGGCGTTGCGAGTTGCTTTAAGAATGGGAAATACACAG TACGTAAAGCAAACGCTTGCTGAATGCAAAGATCCATTGGAAAAACAGCAGEST: gi|18365369|gb|BJ197444.1|BJ197444
genomic: GCAAATATCCAGAGGCGTTGCGAGTTGCTTTAAGAATGGGAAATACACAGgtatgtcgtt ... ttcgcttcagTACGTAAAGCAAACGCTTGCTGAATGCAAAGATCCATTGGAAAAACAGCAG
EST: GCAAATATCCAGAGGCGTTGCGAGTTGCTTTAAGAATGGGAAATACACAG TACGTAAAGCAAACGCTTGCTGAATGCAAAGATCCATTGGAAAAACAGCAGEST: gi|162175301|gb|FC351499.1|FC351499
genomic: GCAAATATCCAGAGGCGTTGCGAGTTGCTTTAAGAATGGGAAATACACAGgtatgtcgtt ... ttcgcttcagTACGTAAAGCAAACGCTTGCTGAATGCAAAGATCCATTGGAAAAACAGCAG
EST: GCAAATATCCAGAGGCGTTGCGAGTTGCTTTAAGAATGGGAAATACACAG TACGTAAAGCAAACGCTTGCTGAATGCAAAGATCCATTGGAAAAACAGCAGEST: gi|162275985|gb|FC452053.1|FC452053
genomic: GCAAATATCCAGAGGCGTTGCGAGTTGCTTTAAGAATGGGAAATACACAGgtatgtcgtt ... ttcgcttcagTACGTAAAGCAAACGCTTGCTGAATGCAAAGATCCATTGGAAAAACAGCAG
EST: GCAAATATCCAGAGGCGTTGCGAGTTGCTTTAAGAATGGGAAATACACAG TACGTAAAGCAAACGCTTGCTGAATGCAAAGATCCATTGGAAAAACAGCAG
genomic: GCAAATATCCAGAGGCGTTGCGAGTTGCTTTAAGAATGGGAAATACACAGgtatgtcgtt ... ttcgcttcagTACGTAAAGCAAACGCTTGCTGAATGCAAAGATCCATTGGAAAAACAGCAG
tttctatttgttggatgtggcaattgctgatgtttgtgttggtggttcgcttcagTACGTAAAGCAAACGCTTGCTGAATGCAAAGATCCATTGGAAAAACAGCAGCTGTGCTACATTTTGGGCAGACAG
tgctgat putative branch site (score: 14)
ttcgcttc putative PPT
atttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcgttaaaagatgattatgtgcttttggactttcgtggagtgaaggtttttgaattatagctactcacatcgtggctcattaagttgctacaagcctgagtaagcatatctttttctatttgttggatgtggcaattgctgatgtttgtgttggtggttcgcttcagTACGTAAAGCAAACGCTTGCTGAATGCAAAGATCCATTGGAAAAACAGCAGCTGTGCTACATTTTGGGCAGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG