Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcggtgtgtgtccaaaagttttgttttttgtttgattttcccttttcattttgaatacggttttgatggtaatatgtgagctgacatcgaggttctgcagGGTAGTGCGAGTTCTTCAACTTTCACAAAAGTTGGGAATAATGTGACTGCCCTTTTGGATCTCTCCTTTTTG

Basic information

species Physcomitrella patens
transcript PP1S3_184V6.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162150049|gb|FC326580.1|FC326580
EST:     TACGGTTGGTGGTCATTGGGTCACATACAAGTGATCAACAAAAGGAGAAG                         GGTAGTGCGAGTTCTTCAACTTTCACAAAAGTTGGGAATAATGTGACTGCC
genomic: TACGGTTGGTGGTCATTGGGTCACATACAAGTGATCAACAAAAGGAGAAGgtgcgcaaaa ... ggttctgcagGGTAGTGCGAGTTCTTCAACTTTCACAAAAGTTGGGAATAATGTGACTGCC
EST: gi|162227223|gb|FC403867.1|FC403867
EST:     TACGGTTGGTGGTCATTGGGTCACATACAAGTGATCAACAAAAGGAGAAG                         GGTAGTGCGAGTTCTTCAACTTTCACAAAAGTTGGGAATAATGTGACTGCC
genomic: TACGGTTGGTGGTCATTGGGTCACATACAAGTGATCAACAAAAGGAGAAGgtgcgcaaaa ... ggttctgcagGGTAGTGCGAGTTCTTCAACTTTCACAAAAGTTGGGAATAATGTGACTGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattttgaatacggttttgatggtaatatgtgagctgacatcgaggttctgcagGGTAGTGCGAGTTCTTCAACTTTCACAAAAGTTGGGAATAATGTGACTGCCCTTTTGGATCTCTCCTTTTTG
                                 agctgac  putative branch site (score: 3)
                        taatatgt  TA-rich tract