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gttagtgttatcctgaatgtcaagtgataatctgacttttagttataggtgattgaagtaagtaaaagatgaagaaccttgaagacgtaatttgttcgcagagctgagtagttgcaattacaatgtaatctacgctagttcacttctgccacgtaaaacctttccttctaacagGTGCGATTCATGTCACGGTCAAGCTGAGAAGTTGCTGGATGCTGCCAAAGAGATGGAAGATTCTATTGGTGTTAACTTGAG
species | Physcomitrella patens |
transcript | PP1S395_48V6.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG GTGCGATTCATGTCACGGTCAAGCTGAGAAGTTGCTGGATGCTGCCAAAGAEST: gi|67695081|gb|BJ955314.1|BJ955314
genomic: ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAGgttagtgtta ... cttctaacagGTGCGATTCATGTCACGGTCAAGCTGAGAAGTTGCTGGATGCTGCCAAAGA
EST: ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG GTGCGATTCATGTCACGGTCAAGCTGAGAAGTTGCTGGATGCTGCCAAAGAEST: gi|37840015|gb|BJ598023.1|BJ598023
genomic: ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAGgttagtgtta ... cttctaacagGTGCGATTCATGTCACGGTCAAGCTGAGAAGTTGCTGGATGCTGCCAAAGA
EST: ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTNCTACCTTCAAAG GTGCGATTCATGTCACGGTCAAGCTGAGAAGTTGCTGGATGCTGCCAAAGAEST: gi|37844029|gb|BJ602037.1|BJ602037
genomic: ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAGgttagtgtta ... cttctaacagGTGCGATTCATGTCACGGTCAAGCTGAGAAGTTGCTGGATGCTGCCAAAGA
EST: ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG GTGCGATTCATGTCACGGTCAAGCTGAGAAGTTGCTGGATGCTGCCAAAGAEST: gi|162260621|gb|FC436625.1|FC436625
genomic: ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAGgttagtgtta ... cttctaacagGTGCGATTCATGTCACGGTCAAGCTGAGAAGTTGCTGGATGCTGCCAAAGA
EST: ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG GTGCGATTCATGTCACGGTCAAGCTGAGAAGTTGCTGGATGCTGCCAAAGAEST: gi|162280061|gb|FC456455.1|FC456455
genomic: ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAGgttagtgtta ... cttctaacagGTGCGATTCATGTCACGGTCAAGCTGAGAAGTTGCTGGATGCTGCCAAAGA
EST: ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG GTGCGATTCATGTCACGGTCAAGCTGAGAAGTTGCTGGATGCTGCCAAAGAEST: gi|18336282|gb|BJ168304.1|BJ168304
genomic: ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAGgttagtgtta ... cttctaacagGTGCGATTCATGTCACGGTCAAGCTGAGAAGTTGCTGGATGCTGCCAAAGA
EST: ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG GTGCGATTCATGTCACGGTCAAGCTGAGAAGTTGCTGGATGCTGCCAAAGAEST: gi|162266125|gb|FC441874.1|FC441874
genomic: ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAGgttagtgtta ... cttctaacagGTGCGATTCATGTCACGGTCAAGCTGAGAAGTTGCTGGATGCTGCCAAAGA
EST: ATGAGGAAAAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG GTGCGATTCATGTCACGGTCAAGCTGAGAAGTTGCTGGATGCTGCCAAAGAEST: gi|37840487|gb|BJ598495.1|BJ598495
genomic: ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAGgttagtgtta ... cttctaacagGTGCGATTCATGTCACGGTCAAGCTGAGAAGTTGCTGGATGCTGCCAAAGA
EST: ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG GTGCGATTCATGTCACGGTCAAGCTGAGAAGTTGCTGGATGCTGCCAAAGAEST: gi|162280060|gb|FC456454.1|FC456454
genomic: ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAGgttagtgtta ... cttctaacagGTGCGATTCATGTCACGGTCAAGCTGAGAAGTTGCTGGATGCTGCCAAAGA
EST: ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAG GTGCGATTCATGTCACGGTCAAGCTGAGAAGTTGCTGGATGCTGCCAAAGA
genomic: ATGAGGAAGAGGAAATTGAAATGCTTCTGGAGTACTACCTTCAAAGgttagtgtta ... cttctaacagGTGCGATTCATGTCACGGTCAAGCTGAGAAGTTGCTGGATGCTGCCAAAGA
acaatgtaatctacgctagttcacttctgccacgtaaaacctttccttctaacagGTGCGATTCATGTCACGGTCAAGCTGAGAAGTTGCTGGATGCTGCCAAAGAGATGGAAGATTCTATTGGTGTTAACTTGAG
cctttccttctaac CT-rich tract
taatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgttatcctgaatgtcaagtgataatctgacttttagttataggtgattgaagtaagtaaaagatgaagaaccttgaagacgtaatttgttcgcagagctgagtagttgcaattacaatgtaatctacgctagttcacttctgccacgtaaaacctttccttctaacagGTGCGATTCATGTCACGGTCAAGCTGAGAAGTTGCTGGATGCTGCCAAAGAGATGGAAGATTCTATTGGTGTTAACTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA