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...gatgcatatttcgcctctttagtaaaatttctgataaggtgttccactaggattaacgggttaactttaaaatgatggttgtattggtgatatcatacagCTTCTGAAAGAGAAGAAATTGCTGCCTGTTCTCCCCCATGTGGTGGATGACGTTGTGATGGCTTTGGAAGATTCATTAAGAGTACCTGCAGCAGGAGTTG
species | Physcomitrella patens |
transcript | PP1S38_401V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAGACACACCTGCTTGTGGATTTGGTTTTGGAGACGCTGTTATTGTCGAG CTTCTGAAAGAGAAGAAATTGCTGCCTGTTCTCCCCCATGTGGTGGATGACEST: gi|162152312|gb|FC328499.1|FC328499
genomic: AAGACACACCTGCTTGTGGATTTGGTTTTGGAGACGCTGTTATTGTCGAGgtcagtaagt ... tatcatacagCTTCTGAAAGAGAAGAAATTGCTGCCTGTTCTCCCCCATGTGGTGGATGAC
EST: AAGACACACCTGCTTGTGGATTTGGTTTTGGAGACGCTGTTATTGTCGAG CTTCTGAAAGAGAAGAAATTGCTGCCTGTTCTCCCCCATGTGGTGGATGACEST: gi|162190166|gb|FC365908.1|FC365908
genomic: AAGACACACCTGCTTGTGGATTTGGTTTTGGAGACGCTGTTATTGTCGAGgtcagtaagt ... tatcatacagCTTCTGAAAGAGAAGAAATTGCTGCCTGTTCTCCCCCATGTGGTGGATGAC
EST: AAGACACACCTGCTTGTGGATTTGCTTTTGGAGACGCTGTTATTGTCGAG CTTCTGAAAGAGAAGAAATTGCTGCCTGTTCTCCCCCATGTGGTGGATGACEST: gi|162229134|gb|FC404493.1|FC404493
genomic: AAGACACACCTGCTTGTGGATTTGGTTTTGGAGACGCTGTTATTGTCGAGgtcagtaagt ... tatcatacagCTTCTGAAAGAGAAGAAATTGCTGCCTGTTCTCCCCCATGTGGTGGATGAC
EST: AAGACACACCTGCTTGTGGATTTGGTTTTGGAGACGCTGTTATTGTCGAG CTTCTGAAAGAGAAGAAATTGCTGCCTGTTCTCCCCCATGTGGTGGATGACEST: gi|162181949|gb|FC357756.1|FC357756
genomic: AAGACACACCTGCTTGTGGATTTGGTTTTGGAGACGCTGTTATTGTCGAGgtcagtaagt ... tatcatacagCTTCTGAAAGAGAAGAAATTGCTGCCTGTTCTCCCCCATGTGGTGGATGAC
EST: AAGACACACCTGCTTGTGGATTTGGTTTTGGAGACGCTGTTATTGTCGAG CTTCTGAAAGAGAAGAAATTGCTGCCTGTTCTCCCCCATGTGGTGGATGACEST: gi|162250564|gb|FC428467.1|FC428467
genomic: AAGACACACCTGCTTGTGGATTTGGTTTTGGAGACGCTGTTATTGTCGAGgtcagtaagt ... tatcatacagCTTCTGAAAGAGAAGAAATTGCTGCCTGTTCTCCCCCATGTGGTGGATGAC
EST: AAGACACACCTGCTTGTGGATTTGGTTTTGGAGACGCTGTTATTGTCGAG CTTCTGAAAGAGAAGAAATTGCTGCCTGTTCTCCCCCATGTGGTGGATGACEST: gi|162226288|gb|FC402996.1|FC402996
genomic: AAGACACACCTGCTTGTGGATTTGGTTTTGGAGACGCTGTTATTGTCGAGgtcagtaagt ... tatcatacagCTTCTGAAAGAGAAGAAATTGCTGCCTGTTCTCCCCCATGTGGTGGATGAC
EST: AAGACACACCTGCTTGTGGATTTGGTTTTGGAGACGCTGTTATTGTCGAG CTTCTGAAAGAGAAGAAATTGCTGCCTGTTCTCCCCCATGTGGTGGATGACEST: gi|162188468|gb|FC365066.1|FC365066
genomic: AAGACACACCTGCTTGTGGATTTGGTTTTGGAGACGCTGTTATTGTCGAGgtcagtaagt ... tatcatacagCTTCTGAAAGAGAAGAAATTGCTGCCTGTTCTCCCCCATGTGGTGGATGAC
EST: AAGACACACCTGCTTGTGGATTTGGTTTTGGAGACGCTGTTATTGTCGAG CTTCTGAAAGAGAAGAAATTGCTGCCTGTTCTCCCCCATGTGGTGGATGACEST: gi|162258146|gb|FC433928.1|FC433928
genomic: AAGACACACCTGCTTGTGGATTTGGTTTTGGAGACGCTGTTATTGTCGAGgtcagtaagt ... tatcatacagCTTCTGAAAGAGAAGAAATTGCTGCCTGTTCTCCCCCATGTGGTGGATGAC
EST: AAGACACACCTGCTTGTGGATTTGGTTTTGGAGACGCTGTTATTGTCGAG CTTCTGAAAGAGAAGAAATTGCTGCCTGTTCTCCCCCATGTGGTGGATGAC
genomic: AAGACACACCTGCTTGTGGATTTGGTTTTGGAGACGCTGTTATTGTCGAGgtcagtaagt ... tatcatacagCTTCTGAAAGAGAAGAAATTGCTGCCTGTTCTCCCCCATGTGGTGGATGAC
actaggattaacgggttaactttaaaatgatggttgtattggtgatatcatacagCTTCTGAAAGAGAAGAAATTGCTGCCTGTTCTCCCCCATGTGGTGGATGACGTTGTGATGGCTTTGGAAGATTCATTAAGAGTACCTGCAGCAGGAGTTG
ttaactttaaaatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgcatatttcgcctctttagtaaaatttctgataaggtgttccactaggattaacgggttaactttaaaatgatggttgtattggtgatatcatacagCTTCTGAAAGAGAAGAAATTGCTGCCTGTTCTCCCCCATGTGGTGGATGACGTTGTGATGGCTTTGGAAGATTCATTAAGAGTACCTGCAGCAGGAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG