Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatcatctgtgggttggaatttatgtcaattgatgatgatgttcttaatacccgcctgagcttaattgaatcgtctgtctattcggtctctaccacacgtgtcatctttcgtttttatatacgtctcagaaaactatcttcgcagtcgattatcatgaaggtagatttttctgactttttagcattatgctctgcagGCAGTTGAGTACCCTCACAGACGCTTTCAGATTCTGCTTCGCAGCACTTTGGGACCCATTGATGTTTACCTTGTCAG

Basic information

species Physcomitrella patens
transcript PP1S38_356V6.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162176994|gb|FC353671.1|FC353671
EST:     CTATCAAGGCCCCTCTTGGGACGACTTTGGAAGTTCCAGATCCAGATGAG                         GCAGTTGAGTACCCTCACAGACGCTTTCAGATTCTGCTTCGCAGCACTTTG
genomic: CTATCAAGGCCCCTCTTGGGACGACTTTGGAAGTTCCAGATCCAGATGAGgtatatcatc ... tgctctgcagGCAGTTGAGTACCCTCACAGACGCTTTCAGATTCTGCTTCGCAGCACTTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtcgattatcatgaaggtagatttttctgactttttagcattatgctctgcagGCAGTTGAGTACCCTCACAGACGCTTTCAGATTCTGCTTCGCAGCACTTTGGGACCCATTGATGTTTACCTTGTCAG
                          ttctgac  putative branch site (score: 2)
                   tagattttt  TA-rich tract