1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgggaacatgtagatgagtggtggatctatagtttacattactttgttggtctggaatttctgcccagcaatgaggtggataacttgtaattcagtgtttaaagtcaactacaatttgaaattatttcgataataagaactggacggacgctttgatggcactaaacagGGTCTCTAATAACCCAACAATGGTTGGCGCACTGGCGGGATCTCTACTATGTCGGAAGTCCGCTGCAAACGCGTTTGCTCAGCACAAACGAGCCACTACT
species | Physcomitrella patens |
transcript | PP1S35_49V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAATATTTTAGCAATGAGAATGCTGCTGGCAAGAAGGAAGTCGAAGAAAG GGTCTCTAATAACCCAACAATGGTTGGCGCACTGGCGGGATCTCTACTATGEST: gi|67697637|gb|BJ957870.1|BJ957870
genomic: GAATATTTTAGCAATGAGAATGCTGCTGGCAAGAAGGAAGTCGAAGAAAGgtgggaacat ... cactaaacagGGTCTCTAATAACCCAACAATGGTTGGCGCACTGGCGGGATCTCTACTATG
EST: GAATATTTTAGCAATGAGAATGCTGCTGGCAAGAAGGAAGTCGAAGAAAG GGTCTCTAATAACCCAACAATGGTTGGCGCACTGGCGGGATCTCTACTATGEST: gi|162264668|gb|FC441666.1|FC441666
genomic: GAATATTTTAGCAATGAGAATGCTGCTGGCAAGAAGGAAGTCGAAGAAAGgtgggaacat ... cactaaacagGGTCTCTAATAACCCAACAATGGTTGGCGCACTGGCGGGATCTCTACTATG
EST: GAATATTTTAGCAATGAGAATGCTGCTGGCAAGAAGGAAGTCGAAGAAAG GGTCTCTAATAACCCAACAATGGTTGGCGCACTGGCGGGATCTCTACTATGEST: gi|67578895|gb|BJ951062.1|BJ951062
genomic: GAATATTTTAGCAATGAGAATGCTGCTGGCAAGAAGGAAGTCGAAGAAAGgtgggaacat ... cactaaacagGGTCTCTAATAACCCAACAATGGTTGGCGCACTGGCGGGATCTCTACTATG
EST: GAATATTTTAGCAATGAGAATGCTGCTGGCAAGAAGGAAGTCGAAGAAAG GGTCTCTAATAACCCAACAATGGTTGGCGCACTGGCGGGATCTCTACTATG
genomic: GAATATTTTAGCAATGAGAATGCTGCTGGCAAGAAGGAAGTCGAAGAAAGgtgggaacat ... cactaaacagGGTCTCTAATAACCCAACAATGGTTGGCGCACTGGCGGGATCTCTACTATG
tttgaaattatttcgataataagaactggacggacgctttgatggcactaaacagGGTCTCTAATAACCCAACAATGGTTGGCGCACTGGCGGGATCTCTACTATGTCGGAAGTCCGCTGCAAACGCGTTTGCTCAGCACAAACGAGCCACTACT
ctttgat putative branch site (score: 6)
aattatttcgataata TA-rich tract