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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatttttcaatacatcagtcaatacatgtgttgttcacaatgtggcctctcgactccaatttgtgcttgcatttgacgattttcttgtcggatccctcagGTTCTAGTACGAAAACGGAGAGCGACAGTGAGACTGAATTTTCGCCATTGATTTCCGATGC

Basic information

species Physcomitrella patens
transcript PP1S35_249V6.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162155764|gb|FC331793.1|FC331793
EST:     CAGGCTCCCCAGCTTGGCTCTAAAG                         GTTCTAGTACGAAAACGGAGAGCGACAGTGAGACTGAATTTTCGCCATTGA
genomic: CAGGCTCCCCAGCTTGGCTCTAAAGgttttcttca ... gatccctcagGTTCTAGTACGAAAACGGAGAGCGACAGTGAGACTGAATTTTCGCCATTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctctcgactccaatttgtgcttgcatttgacgattttcttgtcggatccctcagGTTCTAGTACGAAAACGGAGAGCGACAGTGAGACTGAATTTTCGCCATTGATTTCCGATGC
                         atttgac  putative branch site (score: 4)
                                               tccctc  putative PPT
                                 attttctt  TA-rich tract