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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacgcacacaagatagatagttatagatacagaagaggttaaaatgtgagtcagagagatagagaggattttgactatttgagttggattttcattgcagTAAAGCTATCTCATTGTCCTTGAGAAAAAGGGCGCATATCATGACTGACGGCTTCAACGCGTGTGAAAATGTTGTCTGCAACTTTACTGAGG

Basic information

species Physcomitrella patens
transcript PP1S341_73V6.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162245385|gb|FC421287.1|FC421287
EST:     AATCCTCCGAAACCAGGTGACATTTCGTATCCTCAGTATGAGGCAGAAAG                         TAAAGCTATCTCATTGTCCTTGAGAAAAAGGGCGCATATCATGACTGACGG
genomic: AATCCTCCGAAACCAGGTGACATTTCGTATCCTCAGTATGAGGCAGAAAGgtatctattt ... ttcattgcagTAAAGCTATCTCATTGTCCTTGAGAAAAAGGGCGCATATCATGACTGACGG
EST: gi|162165682|gb|FC342249.1|FC342249
EST:     TTTCGTATCCTCAGTATGAGGCAGAAAG                         TAAAGCTATCTCATTGTCCTTGAGAAAAAGGGCGCATATCATGACTGACGG
genomic: TTTCGTATCCTCAGTATGAGGCAGAAAGgtatctattt ... ttcattgcagTAAAGCTATCTCATTGTCCTTGAGAAAAAGGGCGCATATCATGACTGACGG
EST: gi|162245386|gb|FC421288.1|FC421288
EST:     AATCCTCCGAAACCAGGTGACATTTCGTATCCTCAGTATGAGGCAGAAAG                         TAAAGCTATCTCATTGTCCTTGAGAAAAAGGGCGCATATCATGACTGACGG
genomic: AATCCTCCGAAACCAGGTGACATTTCGTATCCTCAGTATGAGGCAGAAAGgtatctattt ... ttcattgcagTAAAGCTATCTCATTGTCCTTGAGAAAAAGGGCGCATATCATGACTGACGG
EST: gi|162187115|gb|FC362897.1|FC362897
EST:     AAACCAGGTGACATTTCGTATCCTCAGTATGAGGCAGAAAG                         TAAAGCTATCTCATTGTCCTTGAGAAAAAGGGCGCATATCATGACTGACGG
genomic: AAACCAGGTGACATTTCGTATCCTCAGTATGAGGCAGAAAGgtatctattt ... ttcattgcagTAAAGCTATCTCATTGTCCTTGAGAAAAAGGGCGCATATCATGACTGACGG
EST: gi|162151891|gb|FC328137.1|FC328137
EST:     AATCCTCCGAAACCAGGTGACATTTCGTATCCTCAGTATGAGGCAGAAAG                         TAAAGCTATCTCATTGTCCTTGAGAAAAAGGGCGCATATCATGACTGACGG
genomic: AATCCTCCGAAACCAGGTGACATTTCGTATCCTCAGTATGAGGCAGAAAGgtatctattt ... ttcattgcagTAAAGCTATCTCATTGTCCTTGAGAAAAAGGGCGCATATCATGACTGACGG
EST: gi|162173952|gb|FC349752.1|FC349752
EST:     AATCCTCCGAAACCAGGTGACATTTCGTATCCTCAGTATGAGGCAGAAAG                         TAAAGCTATCTCATTGTCCTTGAGAAAAAGGGCGCATATCATGACTGACGG
genomic: AATCCTCCGAAACCAGGTGACATTTCGTATCCTCAGTATGAGGCAGAAAGgtatctattt ... ttcattgcagTAAAGCTATCTCATTGTCCTTGAGAAAAAGGGCGCATATCATGACTGACGG
EST: gi|208350104|gb|DC921908.1|DC921908
EST:     AATCCTCCGAAACCAGGTGACATTTCGTATCCTCAGTATGAGGCAGAAAG                         TAAAGCTATCTCATTGTCCTTGAGAAAAAGGGCGCATATCATGACTGACGG
genomic: AATCCTCCGAAACCAGGTGACATTTCGTATCCTCAGTATGAGGCAGAAAGgtatctattt ... ttcattgcagTAAAGCTATCTCATTGTCCTTGAGAAAAAGGGCGCATATCATGACTGACGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgagtcagagagatagagaggattttgactatttgagttggattttcattgcagTAAAGCTATCTCATTGTCCTTGAGAAAAAGGGCGCATATCATGACTGACGGCTTCAACGCGTGTGAAAATGTTGTCTGCAACTTTACTGAGG
                       ttttgac  putative branch site (score: 3)
                                           ttttcatt  putative PPT
                                          attttcatt  TA-rich tract