1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...tatgcacgatgcctagacgtttttgcttacattgttgaatctggaggcgctttttgatgtgtatgtttggtatttgtttcctctgttgttctctttgcagTGCCGGTCTTGGGGTTGTGAACATGGTGAAGAGTGCAATGCAAAGATTGCTTGGCGGTCATTCCTCTGAAACGCATAAGAAGGCCATCGATCAGTTCTGG
species | Physcomitrella patens |
transcript | PP1S332_33V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCCATGGAGGATCTCGTCAAACAGAAAATCGTTGTCGTTGGTGCTGGAAG TGCCGGTCTTGGGGTTGTGAACATGGTGAAGAGTGCAATGCAAAGATTGCTEST: gi|162176622|gb|FC352467.1|FC352467
genomic: CCCATGGAGGATCTCGTCAAACAGAAAATCGTTGTCGTTGGTGCTGGAAGgtacacagcc ... ctctttgcagTGCCGGTCTTGGGGTTGTGAACATGGTGAAGAGTGCAATGCAAAGATTGCT
EST: CCCATGGAGGATCTCGTCAAACAGAAAATCGTTGTCGTTGGTGCTGGAAG TGCCGGTCTTGGGGTTGTGAACATGGTGAAGAGTGCAATGCAAAGATTGCTEST: gi|67574217|gb|BJ947041.1|BJ947041
genomic: CCCATGGAGGATCTCGTCAAACAGAAAATCGTTGTCGTTGGTGCTGGAAGgtacacagcc ... ctctttgcagTGCCGGTCTTGGGGTTGTGAACATGGTGAAGAGTGCAATGCAAAGATTGCT
EST: CCCATGGAGGATCTCGTCAAACAGAAAATCGTTGTCGTTGGTGCTGGAAG TGCCGGTCTTGGGGTTGTGAACATGGTGAAGAGTGCAATGCAAAGATTGCT
genomic: CCCATGGAGGATCTCGTCAAACAGAAAATCGTTGTCGTTGGTGCTGGAAGgtacacagcc ... ctctttgcagTGCCGGTCTTGGGGTTGTGAACATGGTGAAGAGTGCAATGCAAAGATTGCT
ggcgctttttgatgtgtatgtttggtatttgtttcctctgttgttctctttgcagTGCCGGTCTTGGGGTTGTGAACATGGTGAAGAGTGCAATGCAAAGATTGCTTGGCGGTCATTCCTCTGAAACGCATAAGAAGGCCATCGATCAGTTCTGG
ttttgat putative branch site (score: 22)
tttgtttcctctgttg putative PPT
tatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgcacgatgcctagacgtttttgcttacattgttgaatctggaggcgctttttgatgtgtatgtttggtatttgtttcctctgttgttctctttgcagTGCCGGTCTTGGGGTTGTGAACATGGTGAAGAGTGCAATGCAAAGATTGCTTGGCGGTCATTCCTCTGAAACGCATAAGAAGGCCATCGATCAGTTCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - tgttgaa