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...tctgctgttgactttccgatgccagtagtggcttaaaattactaattcgactttgtgaagaatgtggttgcacgactctgaaggtgttttgaaagcgcagGTTAAGGATTCTATAATATCCCACGGATGCTTCCTCAAGAAATGCAGTGTAGAGCATTCAATTGTTGGTGTTCGATCTCGTCTGGAGTCCGGTTCTGTCT
species | Physcomitrella patens |
transcript | PP1S2_204V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACATCAATTGAACAATGCATG GTTAAGGATTCTATAATATCCCACGGATGCTTCCTCAAGAAATGCAGTGTAEST: gi|162153553|gb|FC330141.1|FC330141
genomic: ACATCAATTGAACAATGCATGgtacccatcc ... gaaagcgcagGTTAAGGATTCTATAATATCCCACGGATGCTTCCTCAAGAAATGCAGTGTA
EST: TCTTCACATCGCCTCGGTATCTTCCCCCGACATCAATTGAACAATGCATG GTTAAGGATTCTATAATATCCCACGGATGCTTCCTCAAGAAATGCAGTGTAEST: gi|162173431|gb|FC349810.1|FC349810
genomic: TCTTCACATCGCCTCGGTATCTTCCCCCGACATCAATTGAACAATGCATGgtacccatcc ... gaaagcgcagGTTAAGGATTCTATAATATCCCACGGATGCTTCCTCAAGAAATGCAGTGTA
EST: CCCGACATCAATTGAACAATGCATG GTTAAGGATTCTATAATATCCCACGGATGCTTCCTCAAGAAATGCAGTGTAEST: gi|67693988|gb|BJ954221.1|BJ954221
genomic: CCCGACATCAATTGAACAATGCATGgtacccatcc ... gaaagcgcagGTTAAGGATTCTATAATATCCCACGGATGCTTCCTCAAGAAATGCAGTGTA
EST: CCCCCGACATCAATTGAANCAATGCATG GTTAAGGATTCTATAATATCCCACGGATGCTTCCTCAAGAAATGCAGTGTEST: gi|162153552|gb|FC330140.1|FC330140
genomic: CCCCCGACATCAATTGAA-CAATGCATGgtacccatcc ... gaaagcgcagGTTAAGGATTCTATAATATCCCACGGATGCTTCCTCAAGAAATGCAGTGT
EST: CCCCGACATCAATTGAACAATGCATG GTTAAGGATTCTATAATATCCCACGGATGCTTCCTCAAGAAATGCAGTGTA
genomic: CCCCGACATCAATTGAACAATGCATGgtacccatcc ... gaaagcgcagGTTAAGGATTCTATAATATCCCACGGATGCTTCCTCAAGAAATGCAGTGTA
ttcgactttgtgaagaatgtggttgcacgactctgaaggtgttttgaaagcgcagGTTAAGGATTCTATAATATCCCACGGATGCTTCCTCAAGAAATGCAGTGTAGAGCATTCAATTGTTGGTGTTCGATCTCGTCTGGAGTCCGGTTCTGTCT
ttttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgctgttgactttccgatgccagtagtggcttaaaattactaattcgactttgtgaagaatgtggttgcacgactctgaaggtgttttgaaagcgcagGTTAAGGATTCTATAATATCCCACGGATGCTTCCTCAAGAAATGCAGTGTAGAGCATTCAATTGTTGGTGTTCGATCTCGTCTGGAGTCCGGTTCTGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA