1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...aacactgaatcattaataatcgtcgctctgaagaacatttgacaattagtaatggagccgtataatggtgtttgatcaagctgtttggttttggaagcagGTGTGGGGCTTGGCCTTGAATCAACAGCAATGCCAGTTCTCGTGATTAGTGTATCTGTTGTTATCACTTACTGGCTTGGCAAAACCTCCGGGCTTCAGGA
species | Physcomitrella patens |
transcript | PP1S28_200V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCAGGTGGCCCTAGCGAGTACAACAGGTCATGGAACCAATGTAATTGCAG GTGTGGGGCTTGGCCTTGAAATCA-CAGCAATGCCAGTTCTCGTGATTAGTEST: gi|18352252|gb|BJ184306.1|BJ184306
genomic: TCAGGTGGCCCTAGCGAGTACAACAGGTCATGGAACCAATGTAATTGCAGgttatctttc ... ttggaagcagGTGTGGGGCTTGGCCTTGAA-TCAACAGCAATGCCAGTTCTCGTGATTAGT
EST: TCAGGTGGCCCTAGCGAGTACAACAGGTCATGGAACCAATGTAATTGCAG GTGTGGGGCTTGGCCTTGAATCAACAGCAATGCCAGTTCTCGTGATTAGTGEST: gi|162164625|gb|FC341920.1|FC341920
genomic: TCAGGTGGCCCTAGCGAGTACAACAGGTCATGGAACCAATGTAATTGCAGgttatctttc ... ttggaagcagGTGTGGGGCTTGGCCTTGAATCAACAGCAATGCCAGTTCTCGTGATTAGTG
EST: TCAGGTGGCCCTAGCGAGTACAACAGGTCATGGAACCAATGTAATTGCAG GTGTGGGGCTTGGCCTTGAATCAACAGCAATGCCAGTTCTCGTGATTAGTG
genomic: TCAGGTGGCCCTAGCGAGTACAACAGGTCATGGAACCAATGTAATTGCAGgttatctttc ... ttggaagcagGTGTGGGGCTTGGCCTTGAATCAACAGCAATGCCAGTTCTCGTGATTAGTG
ttagtaatggagccgtataatggtgtttgatcaagctgtttggttttggaagcagGTGTGGGGCTTGGCCTTGAATCAACAGCAATGCCAGTTCTCGTGATTAGTGTATCTGTTGTTATCACTTACTGGCTTGGCAAAACCTCCGGGCTTCAGGA
gtttgat putative branch site (score: 11)
tataat TA-rich tract