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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttctctgttagttccacgaaaaaaacagtatattgcggtggtctcatacgaaggatctatatgatgatttgaaacatgtatcggaaatttcgttggcagGTTGATGCATATGAGTCGAAGAAACAGGAGCTAGTGGCTGAGAATGCGGATTTACGTGCATTGTTACGATCCATGCAG

Basic information

species Physcomitrella patens
transcript PP1S23_191V6.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S23_191V6.1 (Physcomitrella patens), 3'ss of exon 10
lower sequence: GRMZM2G147500_T04 (Zea mays), 3'ss of exon 8
-------cttctctgttagttccacgaaaaaaacagtatattgcggtggtctcatacgaaggatctatatgatgatttgaaacatgtatcggaaatttcgttggcagGTTGATGCATATGAGTCGAAGAAACAGGAGCTAGTGGCTGAGAATGCGGATTTACGTGCATTGTTACGATCCATGCAG
       |  |  || |  || ||  |  |    |     |  ||    | | | | | ||     ||   ||   ||   |  | |||     |||       |||||||||||||||||   ||||||||| |||||  ||   |||||||| |||||||| ||| ||||||| || ||||||
aaaagaacgacaatgattattacaaaatgattgtaagcagtaacgcaattttgaaatgcagatctgattgaatttattctgatgtatattatgtatt-------cagGTTGATGCATATGAAGTGAAGAAACAAGAGCTGATGCAAGAGAATGCAGATTTACGGGCACTGTTACGTTCAATGCAG

upper sequence: PP1S23_191V6.1 (Physcomitrella patens), 3'ss of exon 10
lower sequence: GRMZM2G147500_T06 (Zea mays), 3'ss of exon 9
cttctctgttagttccacgaaaaaaacagtatattgcggtggtctcatacgaaggatctatatgatgatttgaaacatgtatcggaaatttcgttggcagGTTGATGCATATGAGTCGAAGAAACAGGAGCTAGTGGCTGAGAATGCGGATTTACGTGCATTGTTACGATCCATGCAG
                       || |||||     ||    | | | | | ||     ||   ||   ||   |  | |||     |||       |||||||||||||||||   ||||||||| |||||  ||   |||||||| |||||||| ||| ||||||| || ||||||
---------------------gtaagcagta----acgcaattttgaaatgcagatctgattgaatttattctgatgtatattatgtatt-------cagGTTGATGCATATGAAGTGAAGAAACAAGAGCTGATGCAAGAGAATGCAGATTTACGGGCACTGTTACGTTCAATGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catacgaaggatctatatgatgatttgaaacatgtatcggaaatttcgttggcagGTTGATGCATATGAGTCGAAGAAACAGGAGCTAGTGGCTGAGAATGCGGATTTACGTGCATTGTTACGATCCATGCAG
                                           tttcgtt  CT-rich tract
          atctatat  TA-rich tract