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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctttcagtgctgcttcccgccttgcatagaagctgataaaaatgcaaggtttttggctatcttgtaagcatgctcttgctttttgcaacactaacatctattcgtatatgaatgtgacagGAGGGTACTGCAAATTATTTTAAGGGTTTAATGCTGATTCTTTGCTACTTGATAGTTGGTGCCAGCTTCTTTGTTCATGTCGACATTCCAGACAAGCATC

Basic information

species Physcomitrella patens
transcript PP1S21_141V6.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37827722|gb|BJ585734.1|BJ585734
EST:     AACTGCGACACTTATTCATAACAGTTCTAGTGGTTGCTTTGATGCTTCAG                         GAGGGTACTGCAAATTATTTTAAGGGTTTAATGCTGATTCTTTGCTACTTG
genomic: AACTGCGACAC-TATTCATAACAGTTCTAGTGGTTGCTTTGATGCTTCAGgtaatctttc ... aatgtgacagGAGGGTACTGCAAATTATTTTAAGGGTTTAATGCTGATTCTTTGCTACTTG
EST: gi|100420664|gb|BY993453.1|BY993453
EST:     AACTGCGACACTATTCATAACAGTTCTAGTGGTTGGCTTGGATGCTTCAG                         GAGGGTACTGGCAA-TTATTTAAAGG-TTTAAATGCTGATTCTTTGCAACT
genomic: AACTGCGACACTATTCATAACAGTTCTAGTGGTTG-CTTTGATGCTTCAGgtaatctttc ... aatgtgacagGAGGGTACTG-CAAATTATTTTAAGGGTTTAA-TGCTGATTCTTTGCTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcatgctcttgctttttgcaacactaacatctattcgtatatgaatgtgacagGAGGGTACTGCAAATTATTTTAAGGGTTTAATGCTGATTCTTTGCTACTTGATAGTTGGTGCCAGCTTCTTTGTTCATGTCGACATTCCAGACAAGCATC
                       cactaac  putative branch site (score: 1)
                                       tatatgaat  TA-rich tract