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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgtcacgaaaccatttctacttgcgctagctttcaacatgtttcttcattctgcatatcttgagcacgtattacaagacatttctaacacgatacttgtgctttatatgcagAGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAGAGTACCAGAAGGCCTCAGTGATGTCCCACTTAAACGGCGGTGACAACCACGTGTTCAGATTAGAT

Basic information

species Physcomitrella patens
transcript PP1S215_91V6.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S215_91V6.1 (Physcomitrella patens), 3'ss of exon 10
lower sequence: AT3G23580.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagtttgtcacgaaaccatttctacttgcgctagctttcaacatgtt--tcttcattctgcatatcttgagcacgtattacaagacattt--ctaacacgatacttgtgcttt--------atatgcagAGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAGAGTACCAGAAGGCCTCAGTGATGTC---CCACTTAAACGGCGGTGACAACCACGTGTTCA-GATTAGAT
||||||  |||   | |        | || | ||    |  |  ||     |  | |     ||||||  || || ||| |  |      ||  ||||   | |  | || ||||        || |||||||| || || ||||| ||||||||  | ||||||||||| |||||||| ||||| |||||   || |  ||| ||   | | ||| |||  |||| || |    
gtaagta-gtcgatatatatcgctgagtttctctcatctctaggatcacaatgctaagataacatatcaagaaca-gtagtgtatcttcattgactaagttggttttggtacttttatgacaaatttgcagAGGAAAGACAAACTTCTTTGAGAAGAGAGTGGGAGAGTATCAGAAGGCATCAGTTATGTCGAACCTCCAAAATGGAAATCAGAACTACGAATTCACGACT----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37826799|gb|BJ584811.1|BJ584811
EST:     AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACA                         AGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAGAGTACCAGAAGGCCTC
genomic: AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACAgtaagtttgt ... ttatatgcagAGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAGAGTACCAGAAGGCCTC
EST: gi|208374913|gb|DC956186.1|DC956186
EST:     AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACA                         AGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAGAGTACCAGAAGGCCTC
genomic: AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACAgtaagtttgt ... ttatatgcagAGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAGAGTACCAGAAGGCCTC
EST: gi|67694099|gb|BJ954332.1|BJ954332
EST:     AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACA                         AGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAGAGTACCAGAAGGCCTC
genomic: AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACAgtaagtttgt ... ttatatgcagAGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAGAGTACCAGAAGGCCTC
EST: gi|67570801|gb|BJ943625.1|BJ943625
EST:     AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACA                         AGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAG
genomic: AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACAgtaagtttgt ... ttatatgcagAGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAG
EST: gi|7287125|gb|AW599612.1|AW599612
EST:     AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACA                         AGGTAAAACCAACTTTTTTGAGAAACGGGTGGGA
genomic: AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACAgtaagtttgt ... ttatatgcagAGGTAAAACCAACTTTTTTGAGAAACGGGTGGGA
EST: gi|162262141|gb|FC437910.1|FC437910
EST:     AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACA                         AGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAGAGTACCAGAAGGCCTC
genomic: AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACAgtaagtttgt ... ttatatgcagAGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAGAGTACCAGAAGGCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgagcacgtattacaagacatttctaacacgatacttgtgctttatatgcagAGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAGAGTACCAGAAGGCCTCAGTGATGTCCCACTTAAACGGCGGTGACAACCACGTGTTCAGATTAGAT
                        ttctaac  putative branch site (score: 1)
                                            tttatat  TA-rich tract