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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtagtgctctatgcttatatctgaattgaatcagtaaatcactacgtgccttctttatgacaccttgggtatgctttgcacttaatttactggaaagtcctaatacattgttctgcaaactgattgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTGCCTTTCTTCTACTCTCGCTCCTTCGATCTGTCGTGGCAGTTTTATGGCG

Basic information

species Physcomitrella patens
transcript PP1S211_74V6.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S211_74V6.2 (Physcomitrella patens), 3'ss of exon 10
lower sequence: AT3G52880.1 (Arabidopsis thaliana), 3'ss of exon 9
gtatgtagtgctc----tatg-cttatatc--tgaattgaa---tcagtaaatcactacgtg---ccttctttatgacaccttggg---tatgctttgcac-ttaatttac---tggaaagtcctaatacattgttc-tgca---aactgattgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTGCCTTTCTTCTACTCTCGCTCCTTCGATCTGTCGTGGCAGTTTTATGGCG
|||  || ||||     |||| || |||||  |  |   ||     | |||  ||   | |      | |      |   |||| |   ||    ||  |  ||||  |||   || | |   || ||  |  |||  |  |    |   ||||||  ||||| |||||||| || |||   |||| ||  ||||| || ||||| || || || |||||||||||||||||||| ||||| || |||||||| || || |
gtaaataatgcttacaatatggctgatatcgctacaccaaaaccctattaatccataccataaaaaatgcaacgcaaactcttgaggcctaaatcttatagattaacatacagttgtatatatctgatgaagcgtttatatatgtgatacattgtgg-cagGCGATCAAAGCGGCTGAGGGAGGCGCAGCGGTGGAGGAATACGACTATCTTCCATTCTTCTACTCTCGCTCCTTTGATCTCTCATGGCAGTTCTACGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162272098|gb|FC447892.1|FC447892
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|37847063|gb|BJ605071.1|BJ605071
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|37842299|gb|BJ600307.1|BJ600307
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162269070|gb|FC444938.1|FC444938
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162178671|gb|FC354460.1|FC354460
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|37842298|gb|BJ600306.1|BJ600306
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|37833772|gb|BJ591784.1|BJ591784
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|208374031|gb|DC948900.1|DC948900
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162252208|gb|FC425886.1|FC425886
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162168121|gb|FC343811.1|FC343811
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162162176|gb|FC337750.1|FC337750
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|37851750|gb|BJ609758.1|BJ609758
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162150157|gb|FC326034.1|FC326034
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162247320|gb|FC420284.1|FC420284
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162200524|gb|FC376719.1|FC376719
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162211738|gb|FC387402.1|FC387402
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|37853592|gb|BJ611600.1|BJ611600
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|37841002|gb|BJ599010.1|BJ599010
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTNCNTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|18336777|gb|BJ168800.1|BJ168800
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162163966|gb|FC339876.1|FC339876
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162210761|gb|FC386657.1|FC386657
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162169587|gb|FC345527.1|FC345527
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|67693861|gb|BJ954094.1|BJ954094
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162193928|gb|FC371741.1|FC371741
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162189414|gb|FC365428.1|FC365428
EST:     AGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: AGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162232302|gb|FC408645.1|FC408645
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162188141|gb|FC363907.1|FC363907
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|37847398|gb|BJ605406.1|BJ605406
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|67695526|gb|BJ955759.1|BJ955759
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162161769|gb|FC338209.1|FC338209
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162177473|gb|FC353734.1|FC353734
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162217182|gb|FC392546.1|FC392546
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162247321|gb|FC420285.1|FC420285
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|18339129|gb|BJ171155.1|BJ171155
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTNCAGAGAAGGGCGAAGTCGTGGANGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162177712|gb|FC354546.1|FC354546
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|208345387|gb|DC917312.1|DC917312
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162272099|gb|FC447893.1|FC447893
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacttaatttactggaaagtcctaatacattgttctgcaaactgattgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTGCCTTTCTTCTACTCTCGCTCCTTCGATCTGTCGTGGCAGTTTTATGGCG
                      taatacatt  TA-rich tract