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...ctggctcgacgtgaattttttcaatgattttaatgtctaactttatatttgccatatcaactgttaatggaacgatgtaatgttctgggcttgctggcagGTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTACATCGCATTTGTTTCAGCAGAAGTGGAGACGGACACTCCGGAAGCTGAG
species | Physcomitrella patens |
transcript | PP1S20_16V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACAT GTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTAEST: gi|37851885|gb|BJ609893.1|BJ609893
genomic: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACATgtaagccgtg ... ttgctggcagGTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTA
EST: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACAT GTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTAEST: gi|208363930|gb|DC947202.1|DC947202
genomic: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACATgtaagccgtg ... ttgctggcagGTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTA
EST: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACAT GTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTAEST: gi|18333101|gb|BJ165115.1|BJ165115
genomic: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACATgtaagccgtg ... ttgctggcagGTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTA
EST: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACAT GTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTAEST: gi|162196486|gb|FC375439.1|FC375439
genomic: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACATgtaagccgtg ... ttgctggcagGTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTA
EST: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACAT GTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTAEST: gi|161970273|gb|EE296246.1|EE296246
genomic: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACATgtaagccgtg ... ttgctggcagGTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTA
EST: TCCGTNCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACAT GTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTEST: gi|162180983|gb|FC358637.1|FC358637
genomic: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACATgtaagccgtg ... ttgctggcagGTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGT
EST: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACAT GTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTAEST: gi|37827350|gb|BJ585362.1|BJ585362
genomic: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACATgtaagccgtg ... ttgctggcagGTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTA
EST: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACAT GTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAATTAEST: gi|37844517|gb|BJ602525.1|BJ602525
genomic: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACATgtaagccgtg ... ttgctggcagGTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTA
EST: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACAT GTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTAEST: gi|162229880|gb|FC404333.1|FC404333
genomic: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACATgtaagccgtg ... ttgctggcagGTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTA
EST: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACAT GTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTAEST: gi|37836338|gb|BJ594346.1|BJ594346
genomic: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACATgtaagccgtg ... ttgctggcagGTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTA
EST: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACAT GTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTAEST: gi|162166682|gb|FC342651.1|FC342651
genomic: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACATgtaagccgtg ... ttgctggcagGTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTA
EST: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACAT GTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTAEST: gi|208374624|gb|DC948624.1|DC948624
genomic: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACATgtaagccgtg ... ttgctggcagGTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTA
EST: AATCATTNTGCCACAGAAGCAACTTGGCCGCAGATCAGACAT GTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTAEST: gi|18341638|gb|BJ173673.1|BJ173673
genomic: AATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACATgtaagccgtg ... ttgctggcagGTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTA
EST: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACAT GTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTA
genomic: TCCGTTCAAATCATTCTGCCACAGAAGCAACTTGGCCGCAGATCAGACATgtaagccgtg ... ttgctggcagGTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTA
tatttgccatatcaactgttaatggaacgatgtaatgttctgggcttgctggcagGTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTACATCGCATTTGTTTCAGCAGAAGTGGAGACGGACACTCCGGAAGCTGAG
tgttaat putative branch site (score: 17)
atatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggctcgacgtgaattttttcaatgattttaatgtctaactttatatttgccatatcaactgttaatggaacgatgtaatgttctgggcttgctggcagGTATGTGTTCTGTTGCTCTCACTCTCACAATATAGCTGCAAAAGACAAGTACATCGCATTTGTTTCAGCAGAAGTGGAGACGGACACTCCGGAAGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA