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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atatttttaggccagcctttcttgaaaggtatggtaatttatttttttgctacttcaaatgacattgtcattgataattcctctatttggttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGAAGACAGCCCATTTGGAGATCAGAGTACACTCATCACATTCAAGTGCGCA

Basic information

species Physcomitrella patens
transcript PP1S205_25V6.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162280482|gb|FC456395.1|FC456395
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|208371212|gb|DC956004.1|DC956004
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|67724192|gb|BJ974451.1|BJ974451
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|18339039|gb|BJ171065.1|BJ171065
EST:     TCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|162170103|gb|FC347015.1|FC347015
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|162177265|gb|FC353422.1|FC353422
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|208359054|gb|DC957802.1|DC957802
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|208354342|gb|DC953790.1|DC953790
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|162179279|gb|FC356228.1|FC356228
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|162227183|gb|FC402826.1|FC402826
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAAAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|37832669|gb|BJ590681.1|BJ590681
EST:     TCNCAAATGACGNTGAGGAAACATTCGTNTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|162159392|gb|FC334660.1|FC334660
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|208357076|gb|DC926507.1|DC926507
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|162177061|gb|FC353114.1|FC353114
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|162178856|gb|FC354788.1|FC354788
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|162167604|gb|FC344256.1|FC344256
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|208347204|gb|DC949745.1|DC949745
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|37840478|gb|BJ598486.1|BJ598486
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|162203866|gb|FC379963.1|FC379963
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|162181031|gb|FC358685.1|FC358685
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|162167605|gb|FC344257.1|FC344257
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|162278585|gb|FC454047.1|FC454047
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|162280481|gb|FC456394.1|FC456394
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|162203867|gb|FC379964.1|FC379964
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCANAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|208361679|gb|DC954127.1|DC954127
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|162153878|gb|FC330009.1|FC330009
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|162179456|gb|FC355456.1|FC355456
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|162187678|gb|FC364629.1|FC364629
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|208381579|gb|DC915445.1|DC915445
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|37836121|gb|BJ594129.1|BJ594129
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|208360740|gb|DC946464.1|DC946464
EST:     TCACAAATGACGCTGAGGGAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|162169104|gb|FC345994.1|FC345994
EST:     TCACAAATGACGCTGAGGAAACATTCGTTTATGCGCTCAGTATTTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|37844248|gb|BJ602256.1|BJ602256
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|162177266|gb|FC353423.1|FC353423
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCG
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCG
EST: gi|37830046|gb|BJ588058.1|BJ588058
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|162170104|gb|FC347016.1|FC347016
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|67698740|gb|BJ958973.1|BJ958973
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
EST: gi|162227182|gb|FC402825.1|FC402825
EST:     TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAG                         AAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA
genomic: TCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 8

GCAGTCAAGATTGGCACTTTATCATGGTGTAAGGACTCTTCACATCAACTTCACAAATGACGCTGAGGAAACATTCGTCTATGCGCTCAGTATCTTACAGgtattattat ... ttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGAAGACAGCCCATTTGGAGATCAGAGTACACTCATCACATTCAAGTGCGCA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgctacttcaaatgacattgtcattgataattcctctatttggttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGAAGACAGCCCATTTGGAGATCAGAGTACACTCATCACATTCAAGTGCGCA
                       cattgat  putative branch site (score: 8)
                                             ttgttttt  putative PPT
                        attgataatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atatttttaggccagcctttcttgaaaggtatggtaatttatttttttgctacttcaaatgacattgtcattgataattcctctatttggttgtttttagAAAAAAGGAATGGTTCAGGATGGCGAAGAGGTTGCCTTGGTGCAAAGTGGAAGACAGCCCATTTGGAGATCAGAGTACACTCATCACATTCAAGTGCGCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA