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gtgttgtagtattccgcacccatgtaattaagcttgatgattgatttgctgcaaaacctagtattaggtagaatttgaatcttgtgtattgagtttactctttgtaattgctttgacagGGTTCCTAATATCAAGTTTAACGTCGCTAAGATGCTGCAATCTATGATTCCTATTGTCGATTCCACT
species | Physcomitrella patens |
transcript | PP1S197_114V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GCCACCTGCCAGACAATGTTGCCTGTGGTCATCAATGCAGCCAAAGACAG GGTTCCTAATATCAAGTTTAACGTCGCTAAGATGCTGCAATCTATGATTCCEST: gi|162169851|gb|FC346207.1|FC346207
genomic: GCCACCTGCCAGACAATGTTGCCTGTGGTCATCAATGCAGCCAAAGACAGgtgttgtagt ... gctttgacagGGTTCCTAATATCAAGTTTAACGTCGCTAAGATGCTGCAATCTATGATTCC
EST: GCCACCTGCCAGACAATGTTGCCTGTGGTCATCAATGCAGCCAAAGACAG GGTTCCTAATATCAAGTTTAACGTCGCTAAGATGCTGCAATCTATGATTCCEST: gi|37838705|gb|BJ596713.1|BJ596713
genomic: GCCACCTGCCAGACAATGTTGCCTGTGGTCATCAATGCAGCCAAAGACAGgtgttgtagt ... gctttgacagGGTTCCTAATATCAAGTTTAACGTCGCTAAGATGCTGCAATCTATGATTCC
EST: ACCTGCCAGACAATGTTGCCTGTGGTCATCAATGCAGCCAAAGACAG GGTTCCTAATATCAAGTTTAACGTCGCTAAGATGCTGCAATCTATGATTCCEST: gi|37845596|gb|BJ603604.1|BJ603604
genomic: ACCTGCCAGACAATGTTGCCTGTGGTCATCAATGCAGCCAAAGACAGgtgttgtagt ... gctttgacagGGTTCCTAATATCAAGTTTAACGTCGCTAAGATGCTGCAATCTATGATTCC
EST: CTGCCAGACAATGTTGCCTGTGGTCATCAATGCAGCCAAAGACAG GGTTCCTAATATCAAGTTTAACGTCGCTAAGATGCTGCAATCTATGATTCCEST: gi|37835748|gb|BJ593760.1|BJ593760
genomic: CTGCCAGACAATGTTGCCTGTGGTCATCAATGCAGCCAAAGACAGgtgttgtagt ... gctttgacagGGTTCCTAATATCAAGTTTAACGTCGCTAAGATGCTGCAATCTATGATTCC
EST: GCCACCTGCCAGACAATGTTGCCTGTGGTCATCAATGCAGCCAAAGACAG GGTTCNTAATATCAAGTTTAACGTCGCTAAGATGCTGCAATCTATGATTCCEST: gi|67726784|gb|BJ977043.1|BJ977043
genomic: GCCACCTGCCAGACAATGTTGCCTGTGGTCATCAATGCAGCCAAAGACAGgtgttgtagt ... gctttgacagGGTTCCTAATATCAAGTTTAACGTCGCTAAGATGCTGCAATCTATGATTCC
EST: GCCACCTGCCAGACAATGTTGCCTGTGGTCATCAATGCAGCCAAAGACAG GGTTCCTAATATCAAGTTTAACGTCGCTAAGATGCTGCAATCTATGATTCC
genomic: GCCACCTGCCAGACAATGTTGCCTGTGGTCATCAATGCAGCCAAAGACAGgtgttgtagt ... gctttgacagGGTTCCTAATATCAAGTTTAACGTCGCTAAGATGCTGCAATCTATGATTCC
taggtagaatttgaatcttgtgtattgagtttactctttgtaattgctttgacagGGTTCCTAATATCAAGTTTAACGTCGCTAAGATGCTGCAATCTATGATTCCTATTGTCGATTCCACT
ttgcttt CT-rich tract
aatttgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttgtagtattccgcacccatgtaattaagcttgatgattgatttgctgcaaaacctagtattaggtagaatttgaatcttgtgtattgagtttactctttgtaattgctttgacagGGTTCCTAATATCAAGTTTAACGTCGCTAAGATGCTGCAATCTATGATTCCTATTGTCGATTCCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC