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gtattcattttttaactaaacatattgcaatcttgtagtcatttgtttgcttgattttatgggttttagaaagaattgaattgtacttatccttttttctgatatacgttgtcttttattgttgcagGCGTACCATTCATCTTGAAGGCTGGCAAAGCTTTGGATTCTCGGAAAGCTGAAATCCGTGTGCAGTTTAAGGACGCTCCTGGTGATATTTTTAAGT
species | Physcomitrella patens |
transcript | PP1S192_39V6.5 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCCTACTTTTGCATCTCTTGTGCTGCACATCAACAATGAGCGTTGGGATG GCGTACCATTCATCTTGAAGGCTGGCAAAGCTTTGGATTCTCGGAAAGCTGEST: gi|162279045|gb|FC455072.1|FC455072
genomic: TCCTACTTTTGCATCTCTTGTGCTGCACATCAACAATGAGCGTTGGGATGgtattcattt ... attgttgcagGCGTACCATTCATCTTGAAGGCTGGCAAAGCTTTGGATTCTCGGAAAGCTG
EST: TCCTACTTTTGCATCTCTTGTGCTGCACATCAACAATGAGCGTTGGGATG GCGTACCATTCATCTTGAAGGCTGGCAAAGCTTTGGATTCTCGGAAAGCTGEST: gi|37841660|gb|BJ599668.1|BJ599668
genomic: TCCTACTTTTGCATCTCTTGTGCTGCACATCAACAATGAGCGTTGGGATGgtattcattt ... attgttgcagGCGTACCATTCATCTTGAAGGCTGGCAAAGCTTTGGATTCTCGGAAAGCTG
EST: GCACATCANCAATGAGCGTTGGGGATG GCGTACCATTCATCTTGAAGGCTGGCAAAGCTTTGGATTCTCGGAAAGCTEST: gi|37850762|gb|BJ608770.1|BJ608770
genomic: GCACATCAACAATGAGCGTT-GGGATGgtattcattt ... attgttgcagGCGTACCATTCATCTTGAAGGCTGGCAAAGCTTTGGATTCTCGGAAAGCT
EST: TCCTACTTTTGCATCTCTTGTGCTGCACATCAACAATGAGCGTTGGGATG GCGTACCATTCATCTTGAAGGCTGGCAAAGCTTTGGATTCTCGGAAAGCTGEST: gi|208381262|gb|DC919152.1|DC919152
genomic: TCCTACTTTTGCATCTCTTGTGCTGCACATCAACAATGAGCGTTGGGATGgtattcattt ... attgttgcagGCGTACCATTCATCTTGAAGGCTGGCAAAGCTTTGGATTCTCGGAAAGCTG
EST: TCCTACTTTTGCATCTCTTGTGCTGCACATCAACAATGAGCGTTGGGATG GCGTACCATTCATCTTGAAGGCTGGCAAAGCTTTGGATTCTCGGAAAGCTGEST: gi|37821380|gb|BJ579446.1|BJ579446
genomic: TCCTACTTTTGCATCTCTTGTGCTGCACATCAACAATGAGCGTTGGGATGgtattcattt ... attgttgcagGCGTACCATTCATCTTGAAGGCTGGCAAAGCTTTGGATTCTCGGAAAGCTG
EST: GTGCTGCACATCAACAATGAGCGTTGGGATG GCGTACCATTCGTCTTGAAGGCTGGCAAAGCTTTGGATTCTCGGAAAGCTGEST: gi|37851014|gb|BJ609022.1|BJ609022
genomic: GTGCTGCACATCAACAATGAGCGTTGGGATGgtattcattt ... attgttgcagGCGTACCATTCATCTTGAAGGCTGGCAAAGCTTTGGATTCTCGGAAAGCTG
EST: TCCTACTTTTGCATCTCTTGTGCTGCACATCAACAATGAGCGTTGGGATG GCGTACCATTCATCTTGAAGGCTGGCAAAGCTTTGGATTCTCGGAAAGCTGEST: gi|37850441|gb|BJ608449.1|BJ608449
genomic: TCCTACTTTTGCATCTCTTGTGCTGCACATCAACAATGAGCGTTGGGATGgtattcattt ... attgttgcagGCGTACCATTCATCTTGAAGGCTGGCAAAGCTTTGGATTCTCGGAAAGCTG
EST: TGCTGCACATCAACAATGAGCGTTGGGATG GCGTACCATTCATCTTGAAGGCTGGCAAAGCTTTGGATTCTCGGAAAGCTG
genomic: TGCTGCACATCAACAATGAGCGTTGGGATGgtattcattt ... attgttgcagGCGTACCATTCATCTTGAAGGCTGGCAAAGCTTTGGATTCTCGGAAAGCTG
gaattgaattgtacttatccttttttctgatatacgttgtcttttattgttgcagGCGTACCATTCATCTTGAAGGCTGGCAAAGCTTTGGATTCTCGGAAAGCTGAAATCCGTGTGCAGTTTAAGGACGCTCCTGGTGATATTTTTAAGT
ttctgat putative branch site (score: 3)
tcttttatt putative PPT
ttttttctgatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcattttttaactaaacatattgcaatcttgtagtcatttgtttgcttgattttatgggttttagaaagaattgaattgtacttatccttttttctgatatacgttgtcttttattgttgcagGCGTACCATTCATCTTGAAGGCTGGCAAAGCTTTGGATTCTCGGAAAGCTGAAATCCGTGTGCAGTTTAAGGACGCTCCTGGTGATATTTTTAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA