1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaaggataatctttctggatttgcagcaatacttgttgtaccaaatgcttcatacatttcatgttttcttattgtagttgtgtgattggtttgcatgaaactgctttccgatactaattaagcttcaccattacactttttaatttgtttcaggttgtgatgtttttggtggtcagGTTCTGGAATGTATTAAGCCTTTCAATGACAAAGAGGTGGTTATTGGACAGTATGAGGGCTACAAGGATGACCAGACTGTTCCAAATGATTCCTCCACTC
species | Physcomitrella patens |
transcript | PP1S192_39V6.4 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTCGGGATGAGNAAGTCAAG NTT-TNGAATGTATT-AGCCTTTCAATGACCAAGAGGTGGTTATTGGACAGEST: gi|162173094|gb|FC349200.1|FC349200
genomic: TTCGGGATGAGAAAGTCAAGgtaaggataa ... tggtggtcagGTTCTGGAATGTATTAAGCCTTTCAATGACAAAGAGGTGGTTATTGGACAG
EST: GGATGAGAAAGTCAAG GTTCTGGAATGTATTAAGCCTTTCAATGACAAAGAGGTGGTTATTGGACAGEST: gi|162279046|gb|FC455073.1|FC455073
genomic: GGATGAGAAAGTCAAGgtaaggataa ... tggtggtcagGTTCTGGAATGTATTAAGCCTTTCAATGACAAAGAGGTGGTTATTGGACAG
EST: AAAAACCAATTTCCCTCAGTCCTGAGCATATTCGGGATGAGAAAGTCAAG GTTCTGGAATGTATTAAGCCTTTCAATGACAAAGAGGTGGTTATTGGACAG
genomic: AAAAACCAATTTCCCTCAGTCCTGAGCATATTCGGGATGAGAAAGTCAAGgtaaggataa ... tggtggtcagGTTCTGGAATGTATTAAGCCTTTCAATGACAAAGAGGTGGTTATTGGACAG
gcttcaccattacactttttaatttgtttcaggttgtgatgtttttggtggtcagGTTCTGGAATGTATTAAGCCTTTCAATGACAAAGAGGTGGTTATTGGACAGTATGAGGGCTACAAGGATGACCAGACTGTTCCAAATGATTCCTCCACTC
ttttaat putative branch site (score: 3)
tgttttt putative PPT
attacactttttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggataatctttctggatttgcagcaatacttgttgtaccaaatgcttcatacatttcatgttttcttattgtagttgtgtgattggtttgcatgaaactgctttccgatactaattaagcttcaccattacactttttaatttgtttcaggttgtgatgtttttggtggtcagGTTCTGGAATGTATTAAGCCTTTCAATGACAAAGAGGTGGTTATTGGACAGTATGAGGGCTACAAGGATGACCAGACTGTTCCAAATGATTCCTCCACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG