Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcctgcagatatcttttacaatctccattgtcttaactccgccctcctaccaaatgcgatacgcatcatttttccagcattttgtttggcaatagggaagcctaatcttttgtttcaaacgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCATGCCGATCCATTCCATAGCAACTGTGTTGCATTAGTAGTGGCAAACCAAG

Basic information

species Physcomitrella patens
transcript PP1S186_65V6.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208354168|gb|DC957402.1|DC957402
EST:     AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|37839451|gb|BJ597459.1|BJ597459
EST:     AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|162275892|gb|FC451453.1|FC451453
EST:     AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|162174770|gb|FC352186.1|FC352186
EST:     AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCGCTTGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|208374594|gb|DC948608.1|DC948608
EST:     AAGCTGGTGAATATGTGTCACTTGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: AAGCTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|162213167|gb|FC389052.1|FC389052
EST:     AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCGCTTGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|37849759|gb|BJ607767.1|BJ607767
EST:     AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|37843445|gb|BJ601453.1|BJ601453
EST:     AGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: AGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|162196324|gb|FC374367.1|FC374367
EST:     AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCGCTTGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|37839002|gb|BJ597010.1|BJ597010
EST:     AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|162273456|gb|FC449905.1|FC449905
EST:     AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|162188838|gb|FC364852.1|FC364852
EST:     TGCAAGCTGGTGAATATGTGTCGCTNGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: TGCAAGCTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|162196325|gb|FC374368.1|FC374368
EST:     AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCGCTTGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|37839692|gb|BJ597700.1|BJ597700
EST:     AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|162197910|gb|FC373652.1|FC373652
EST:     AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCGCTTGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|162273457|gb|FC449906.1|FC449906
EST:     AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|162188839|gb|FC364853.1|FC364853
EST:     AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCGCTTGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATNACGTTATGATTCAT
genomic: AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|37846229|gb|BJ604237.1|BJ604237
EST:     CTGGTGAATATGTGTCACTTGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: CTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|37846846|gb|BJ604854.1|BJ604854
EST:     AGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: AGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|37835874|gb|BJ593886.1|BJ593886
EST:     CTGGTGAATATGTGTCACTTGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: CTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|18338675|gb|BJ170699.1|BJ170699
EST:     AATATGTGTCACTTGGCAAG                         GTGNAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: AATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|18341761|gb|BJ173796.1|BJ173796
EST:     AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|162165355|gb|FC341974.1|FC341974
EST:     AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCGCTTGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|162246877|gb|FC422766.1|FC422766
EST:     AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCGCTTGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: AGAAAGACATCGTAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
EST: gi|37848517|gb|BJ606525.1|BJ606525
EST:     TAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAG                         GTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT
genomic: TAAAATTGCAAGCTGGTGAATATGTGTCACTTGGCAAGgtatgcctgc ... cgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagcattttgtttggcaatagggaagcctaatcttttgtttcaaacgtattgcagGTGGAGTCAGTGCTTTCAGGCTCTCAATACGTAGATAACGTTATGATTCATGCCGATCCATTCCATAGCAACTGTGTTGCATTAGTAGTGGCAAACCAAG
                         gcctaat  putative branch site (score: 3)
                            taatctttt  TA-rich tract