1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagtgctggattgcgtttgtgcattttttcttttgtcattcggtaatgaatctgcatgaactgtttaggattttgacatcatcctaacttgaggagatgtggtctgcatttgtttattcttgactatcgagagtttggtggtgttgtgcagTCTAGGTCAAAGGCTCTTGCAGATCTTCAACTAATGCAGTCTGTGAAGGTTGACAAGTTGAGTGACATACAATGTCAACCTGTCTCGCAACTGAAATTTG
species | Physcomitrella patens |
transcript | PP1S178_72V6.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTCTTGAACGCTACACACATTACTATGAACGTTGGGCTACAAATGAGTCT TCTAGGTCAAAGGCTCTTGCAGATCTTCAACTAATGCAGTCTGTGAAGGTTEST: gi|22132083|gb|BQ826972.1|BQ826972
genomic: CTCTTGAACGCTACACACATTACTATGAACGTTGGGCTACAAATGAGTCTgtaagtgctg ... tgttgtgcagTCTAGGTCAAAGGCTCTTGCAGATCTTCAACTAATGCAGTCTGTGAAGGTT
EST: CTCTTGAACGCTACACACATTACTATGAACGTTGGGCTACAAATGAGTCT TCTAGGTCAAAGGCTCTTGCAGATCTTCAACTAATGCAGTCTGTGAAGGTT
genomic: CTCTTGAACGCTACACACATTACTATGAACGTTGGGCTACAAATGAGTCTgtaagtgctg ... tgttgtgcagTCTAGGTCAAAGGCTCTTGCAGATCTTCAACTAATGCAGTCTGTGAAGGTT
atgtggtctgcatttgtttattcttgactatcgagagtttggtggtgttgtgcagTCTAGGTCAAAGGCTCTTGCAGATCTTCAACTAATGCAGTCTGTGAAGGTTGACAAGTTGAGTGACATACAATGTCAACCTGTCTCGCAACTGAAATTTG
tcttgac putative branch site (score: 10)
atttgtttattctt TA-rich tract