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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtattttgtgcgtaaattttgtggtattctagattttcattgcattctgggtaagtttggctggtcggaatgattcatttttcatcagttgcagtggtgagtatgatctagaaacaagtgcctgtcgaaatgctttgttgcttttccctaactgaatgtgatctaattttatgtggtgtcaatattcacagCCGTTCTCGTAGTAAGACTCCCCGCAGCCGCTCTCCTCGGTCACGTTCTCGGTCACCACGGTCTGCGACCCCTGCATCTAGGTCACGTTCACGTTCCCGC

Basic information

species Physcomitrella patens
transcript PP1S173_12V6.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67698067|gb|BJ958300.1|BJ958300
EST:     TACGGATCTCGAAGGAGCGTCACTCGAAGCCGTTCACCACGTAGTCGCAG                         CCGTTCTCGTAGTAAGACTCCCCGCAGCCGCTCTCCTCGGTCACGTTCTCG
genomic: TACGGATCTCGAAGGAGCGTCACTCGAAGCCGTTCACCACGTAGTCGCAGgtattgtatt ... atattcacagCCGTTCTCGTAGTAAGACTCCCCGCAGCCGCTCTCCTCGGTCACGTTCTCG
EST: gi|208353229|gb|DC926154.1|DC926154
EST:     TACGGATCTCGAAGGAGCGTCACTCGAAGCCGTTCACCANGTAGTCGCAG                         CCGNTCTCGTAGTAAGACTCCCCGCAGCCGCTCTCCTCGGTCACGTTNTCG
genomic: TACGGATCTCGAAGGAGCGTCACTCGAAGCCGTTCACCACGTAGTCGCAGgtattgtatt ... atattcacagCCGTTCTCGTAGTAAGACTCCCCGCAGCCGCTCTCCTCGGTCACGTTCTCG
EST: gi|37846921|gb|BJ604929.1|BJ604929
EST:     TACGGATCTCGAAGGAGCGTCACTCGAAGCCGTTCACCACGTAGTCGCAG                         CCGTTCTCGTAGTAAGACTCCCCGCAGCCGCTCTCCTCGGTCACGTTCTCG
genomic: TACGGATCTCGAAGGAGCGTCACTCGAAGCCGTTCACCACGTAGTCGCAGgtattgtatt ... atattcacagCCGTTCTCGTAGTAAGACTCCCCGCAGCCGCTCTCCTCGGTCACGTTCTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgcttttccctaactgaatgtgatctaattttatgtggtgtcaatattcacagCCGTTCTCGTAGTAAGACTCCCCGCAGCCGCTCTCCTCGGTCACGTTCTCGGTCACCACGGTCTGCGACCCCTGCATCTAGGTCACGTTCACGTTCCCGC
                      tgatctaattttat  TA-rich tract