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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattgtgcttccactacgtgtctcttttaatgcccttcagtgtacattttgagacaaagttggtaatgttactgaacctatccttagtcaatatttgcagTTGGCTTTCTCCTTTTTAGTGTATCCATCCGTGCTCCTTACTTATGCTGGGCAAACAGCATATCTCATAAACCACCCCGAGAACTATTTAGAGGGATTCT

Basic information

species Physcomitrella patens
transcript PP1S166_51V6.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S166_51V6.1 (Physcomitrella patens), 3'ss of exon 10
lower sequence: LOC_Os09g27580.1 (Oryza sativa), 3'ss of exon 5
aattgtgcttccactacgtgtctcttttaatgcc-cttcagtgtacattttgagacaaagttggtaatgttactgaacctatccttagtcaatatttgcagTTGGCTTTCTCCTTTTTAGTGTATCCATCCGTGCTCCTTACTTATGCTGGGCAAACAGCATATCTCATAAACCACCCCGAGAACTATTTAGAGGGATTCT
                   ||   ||| | ||   | ||  | | || ||| | |||   |   |||| |     |    ||| ||  |     ||| ||| | || ||    | |    | ||||| ||  || | || ||||||||||||||||||||||| || |||||| |   | |  ||| |   || || ||||
-------------------gttagtttcattgagacgtccatctgcaattt-atacacgat--ataatttcttacagttgatctttttt-----ttttcagATAGCATTTCTGTCTAGCATATATCCTTCTTTGGTGCTCACTTATGCTGGGCAAACAGCATACCTTATAAACAATGTCAATGACTTTGGTGATGGTTTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgagacaaagttggtaatgttactgaacctatccttagtcaatatttgcagTTGGCTTTCTCCTTTTTAGTGTATCCATCCGTGCTCCTTACTTATGCTGGGCAAACAGCATATCTCATAAACCACCCCGAGAACTATTTAGAGGGATTCT
                                          tcaatattt  TA-rich tract