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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggattgctaaacttattgaaattttttcacgaatcttttgctctctcaacaaatgttgtgtagcgttttaaaattaatctttgaactggcagtgtaccagGTTCAGGTTTAGGGTTGCGTTACCCTCTTGGTAGGAAATGAAACATGACCT

Basic information

species Physcomitrella patens
transcript PP1S15_485V6.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67723043|gb|BJ973302.1|BJ973302
EST:     TCATTCAAAGATGTCACACAAGTACTAGAACATACGTAGACTCTTACAAG                         GTTCAGGTTTAGGGTTGCGTTACCCTCTTGGTAGGAAATGAAACCATGACC
genomic: TCATTCAAAGATGTCACACAAGTACTAGAACATACGTAGACTCTTACAAGgtacgtagaa ... agtgtaccagGTTCAGGTTTAGGGTTGCGTTACCCTCTTGGTAGGAAATGAAAC-ATGACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaacaaatgttgtgtagcgttttaaaattaatctttgaactggcagtgtaccagGTTCAGGTTTAGGGTTGCGTTACCCTCTTGGTAGGAAATGAAACATGACCT
                          aattaat  putative branch site (score: 3)
                    ttttaaaattaatctt  TA-rich tract