1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...aaattaaggatcgaactatcccatggtttacccattgcaagtccatcataaatatagatgatgattagtgtgctcaggaatacgatggctattctcgcagGTGCGTGATAGAGCCACTCTCTATTTAAGTCTTCTCTCAGATGAACCAGACGCTGCTCAAGATGACGCTAAAGCTTTCTTGTTTCAAGATTTGGACGTGC
species | Physcomitrella patens |
transcript | PP1S15_298V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CACGGATTCTTATACTGCTTCGAAGGTGTTTGTACGATAATGATGATGAG GTGCGTGATAGAGCCACTCTCTATTTAAGTCTTCTCTCAGATGAACCAGACEST: gi|162151629|gb|FC327758.1|FC327758
genomic: CACGGATTCTTATACTGCTTCGAAGGTGTTTGTACGATAATGATGATGAGgtacttaatt ... attctcgcagGTGCGTGATAGAGCCACTCTCTATTTAAGTCTTCTCTCAGATGAACCAGAC
EST: CACGGATTCTTATACTGCTTCGAAGGTGTTTGTACGATAATGATGATGAG GTGCGTGATAGAGCCACTCTCTATTTAAGTCTTCTCTCAGATGAACCAGACEST: gi|162177638|gb|FC353224.1|FC353224
genomic: CACGGATTCTTATACTGCTTCGAAGGTGTTTGTACGATAATGATGATGAGgtacttaatt ... attctcgcagGTGCGTGATAGAGCCACTCTCTATTTAAGTCTTCTCTCAGATGAACCAGAC
EST: CACGGATTCTTATACTGCTTCGAAGGTGTTTGTACGATAATGATGATGAG GTGCGTGATAGAGCCACTCTCTATTTAAGTCTTCTCTCAGATGAACCAGACEST: gi|162151227|gb|FC327187.1|FC327187
genomic: CACGGATTCTTATACTGCTTCGAAGGTGTTTGTACGATAATGATGATGAGgtacttaatt ... attctcgcagGTGCGTGATAGAGCCACTCTCTATTTAAGTCTTCTCTCAGATGAACCAGAC
EST: CACGGATTCTTATACTGCTTCGAAGGTGTTTGTACGATAATGATGATGAG GTGCGTGATAGAGCCACTCTCTATTTAAGTCTTCTCTCAGATGAACCAGACEST: gi|162150207|gb|FC326292.1|FC326292
genomic: CACGGATTCTTATACTGCTTCGAAGGTGTTTGTACGATAATGATGATGAGgtacttaatt ... attctcgcagGTGCGTGATAGAGCCACTCTCTATTTAAGTCTTCTCTCAGATGAACCAGAC
EST: CACGGATTCTTATACTGCTTCGAAGGTGTTTGTACGATAATGATGATGAG GTGCGTGATAGAGCCACTCTCTATTTAAGTCTTCTCTCAGATGAACCAGACEST: gi|18363604|gb|BJ195676.1|BJ195676
genomic: CACGGATTCTTATACTGCTTCGAAGGTGTTTGTACGATAATGATGATGAGgtacttaatt ... attctcgcagGTGCGTGATAGAGCCACTCTCTATTTAAGTCTTCTCTCAGATGAACCAGAC
EST: CACGGATTCTTATACTGCTTCGAAGGTGTTTGTACGATAATGATGATGAG GTGCGTGATANANCCACTCTCTATTTAAGTCTTCTCTCAGATGAACCAGACEST: gi|161984098|gb|EE296401.1|EE296401
genomic: CACGGATTCTTATACTGCTTCGAAGGTGTTTGTACGATAATGATGATGAGgtacttaatt ... attctcgcagGTGCGTGATAGAGCCACTCTCTATTTAAGTCTTCTCTCAGATGAACCAGAC
EST: ACGATAATGATGATGAG GTGCGTGATAGAGCCACTCTCTATTTAAGTCTTCTCTCAGATGAACCAGACEST: gi|162270704|gb|FC446317.1|FC446317
genomic: ACGATAATGATGATGAGgtacttaatt ... attctcgcagGTGCGTGATAGAGCCACTCTCTATTTAAGTCTTCTCTCAGATGAACCAGAC
EST: CACGGATTCTTATACTGCTTCGAAGGTGTTTGTACGATAATGATGATGAG GTGCGTGATAGAGCCACTCTCTATTTAAGTCTTCTCTCAGATGAACCAGAC
genomic: CACGGATTCTTATACTGCTTCGAAGGTGTTTGTACGATAATGATGATGAGgtacttaatt ... attctcgcagGTGCGTGATAGAGCCACTCTCTATTTAAGTCTTCTCTCAGATGAACCAGAC
tcataaatatagatgatgattagtgtgctcaggaatacgatggctattctcgcagGTGCGTGATAGAGCCACTCTCTATTTAAGTCTTCTCTCAGATGAACCAGACGCTGCTCAAGATGACGCTAAAGCTTTCTTGTTTCAAGATTTGGACGTGC
ctattctc CT-rich tract
aatatagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattaaggatcgaactatcccatggtttacccattgcaagtccatcataaatatagatgatgattagtgtgctcaggaatacgatggctattctcgcagGTGCGTGATAGAGCCACTCTCTATTTAAGTCTTCTCTCAGATGAACCAGACGCTGCTCAAGATGACGCTAAAGCTTTCTTGTTTCAAGATTTGGACGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG