1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...acattaggtttgttgcatatcaaagggtttgggacaccccttctttattgaaacacccattttgctagtagattatgggattcatgttttgagggcacagGTTACAGGAGAGCTGTTGGACGAGCTTTCTAGTTGGGATGCACTACGAGCAGCGTTGCCAGTCGGCACTGTCAGCGGGGCTCCTAAG
species | Physcomitrella patens |
transcript | PP1S154_130V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGTTGATGGAGGTGGAGCGGTATTCACACGTGATGCACATCAGTTCCACG GTTACAGGAGAGCTGTTGGACGAGCTTTCTAGTTGGGATGCACTACGAGCAEST: gi|162150977|gb|FC327873.1|FC327873
genomic: AGTTGATGGAGGTGGAGCGGTATTCACACGTGATGCACATCAGTTCCACGgtactgatcc ... gagggcacagGTTACAGGAGAGCTGTTGGACGAGCTTTCTAGTTGGGATGCACTACGAGCA
EST: AGTTGATGGAGGTGGAGCGGGATTCACACGTGATGCACATCAGTTCCACG GTTACAGGAAAGCTGTTGGACAAGCTTTCTAGTTGGGATGCACTACGAGCA
genomic: AGTTGATGGAGGTGGAGCGGTATTCACACGTGATGCACATCAGTTCCACGgtactgatcc ... gagggcacagGTTACAGGAGAGCTGTTGGACGAGCTTTCTAGTTGGGATGCACTACGAGCA
tattgaaacacccattttgctagtagattatgggattcatgttttgagggcacagGTTACAGGAGAGCTGTTGGACGAGCTTTCTAGTTGGGATGCACTACGAGCAGCGTTGCCAGTCGGCACTGTCAGCGGGGCTCCTAAG
tagattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acattaggtttgttgcatatcaaagggtttgggacaccccttctttattgaaacacccattttgctagtagattatgggattcatgttttgagggcacagGTTACAGGAGAGCTGTTGGACGAGCTTTCTAGTTGGGATGCACTACGAGCAGCGTTGCCAGTCGGCACTGTCAGCGGGGCTCCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - tgttgca