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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgctttaaatcattactactattttcttcttttggttgagctgaagtttttgtcttaaatcagagacaccaatgtcaaagttgtgtgaatgaacgtacttaaggtgtaaatctaacagtttgtcctcaatgccatgagcatctcgctgattcttgtcgaaacgtggcacaaattttgcagTATCTGCCCCGTTTAGTTATGCTTGCTTTGCAATCTTGCAACCTTGATGACGGGACGGCATTTGAACTGGCCGACTCTGATGGTGATGATAACATTGGTG

Basic information

species Physcomitrella patens
transcript PP1S143_122V6.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162201180|gb|FC377687.1|FC377687
EST:     ATGGTTTCTTTAGCCATGTTGCTGAAATTCTGGAAGAGGACGTGGTTCCG                         TATCTGCCCCGTTTAGTTATGCTTGCTTTGCAATCTTGCAACCTTGATGAC
genomic: ATGGTTTCTTTAGCCATGTTGCTGAAATTCTGGAAGAGGACGTGGTTCCGgtacgtgctt ... aattttgcagTATCTGCCCCGTTTAGTTATGCTTGCTTTGCAATCTTGCAACCTTGATGAC
EST: gi|162278762|gb|FC454872.1|FC454872
EST:     ATGGTTTCTTTAGCCATGTTGCTGAAATTCTGGAAGAGGACGTGGTTCCG                         TATCTGCCCCGTTTAGTTATGCTTGCTTTGCAATCTTGCAACCTTGATGAC
genomic: ATGGTTTCTTTAGCCATGTTGCTGAAATTCTGGAAGAGGACGTGGTTCCGgtacgtgctt ... aattttgcagTATCTGCCCCGTTTAGTTATGCTTGCTTTGCAATCTTGCAACCTTGATGAC
EST: gi|162164285|gb|FC342100.1|FC342100
EST:     ATGGTTTCTTTAGCCATGTTGCTGAAATTCTGGAAGAGGACGTGGTTCCG                         TATCTGCCCCGTTTAGTTATGCTTGCTTTGCAATCTTGCAACCTTGATGAC
genomic: ATGGTTTCTTTAGCCATGTTGCTGAAATTCTGGAAGAGGACGTGGTTCCGgtacgtgctt ... aattttgcagTATCTGCCCCGTTTAGTTATGCTTGCTTTGCAATCTTGCAACCTTGATGAC
EST: gi|162156754|gb|FC333883.1|FC333883
EST:     ATGGTTTCTTTAGCCATGTTGCTGAAATTCTGGAAGAGGACGTGGTTCCG                         TATCTGCCCCGTTTAGTTATGCTTGCTTTGCAATCTTGCAACCTTGATGAC
genomic: ATGGTTTCTTTAGCCATGTTGCTGAAATTCTGGAAGAGGACGTGGTTCCGgtacgtgctt ... aattttgcagTATCTGCCCCGTTTAGTTATGCTTGCTTTGCAATCTTGCAACCTTGATGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaatgccatgagcatctcgctgattcttgtcgaaacgtggcacaaattttgcagTATCTGCCCCGTTTAGTTATGCTTGCTTTGCAATCTTGCAACCTTGATGACGGGACGGCATTTGAACTGGCCGACTCTGATGGTGATGATAACATTGGTG
                  cgctgat  putative branch site (score: 4)
                                          acaaatttt  TA-rich tract