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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttctttttctttcctgtgacagcattcagtattgtgcagccaatatttgaatgcacatagtttgtcaaatctgttcatcagtatgttgtgtaacttttctgacacagagattactcccgcagGTTATGGAATTCCTGGGACGCCTAGTGAATTGGAAAAAATGGGGACCCGAGAAATGGAATGGCGTTCAAAATGGTCGATATTTCATGAACTAGATTGTCG

Basic information

species Physcomitrella patens
transcript PP1S141_116V6.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100387739|gb|BY951739.1|BY951739
EST:     CCATCCCTAAGTCAACGAAGGCCACTCTTTCGCTTCGAGAACCTTCAGAG                         GTTATGGAATTCCTGGGACGCCTAGTGAATTGGAAAAAATGGGGACCCGAG
genomic: CCATCCCTAAGTCAACGAAGGCCACTCTTTCGCTTCGAGAACCTTCAGAGgtacttcttt ... actcccgcagGTTATGGAATTCCTGGGACGCCTAGTGAATTGGAAAAAATGGGGACCCGAG
EST: gi|162239484|gb|FC416818.1|FC416818
EST:     CCATCCCTAAGTCAACGAAGGCCACTCTTTCGCTTCGAGAACCTTCAGAG                         GTTATGGAATTCCTGGGACGCCTAGTGAATTGGAAAAAATGGGGACCCGAG
genomic: CCATCCCTAAGTCAACGAAGGCCACTCTTTCGCTTCGAGAACCTTCAGAGgtacttcttt ... actcccgcagGTTATGGAATTCCTGGGACGCCTAGTGAATTGGAAAAAATGGGGACCCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatctgttcatcagtatgttgtgtaacttttctgacacagagattactcccgcagGTTATGGAATTCCTGGGACGCCTAGTGAATTGGAAAAAATGGGGACCCGAGAAATGGAATGGCGTTCAAAATGGTCGATATTTCATGAACTAGATTGTCG
                             ttctgac  putative branch site (score: 2)
                                           ttactccc  putative PPT
                       taactttt  TA-rich tract