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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catcagtgttagaccatcagcatatgtgttattttgcttctagacctgtagatgtaattaaagtaagtaataaaatcaaatttattttgtgtggtttcagCCTGAGAAGAAAAATCCAGGTTTGACACCTATGGATTGGGTCAAGTTGTTGATATCGGCATTGGTTGGCCTG

Basic information

species Physcomitrella patens
transcript PP1S140_106V6.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S140_106V6.1 (Physcomitrella patens), 3'ss of exon 10
lower sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 9
-----------------------------------catcagtgttagaccatcagcatatgtgttatt--ttgcttctagacctgt-agatgtaattaaagtaagtaataaaatcaaatttattttgtgtggttt--cagCCTGAGAAGAAAAATCCAGGTTTGACACCTATGGATTGGGTCAAGTTGTTGATATCGGCATTGGTTGGCCTG
                                   ||       |  | |    | || |    | ||  ||||  ||    || | | | ||  |  |   |  |  ||| ||    | ||   | |    ||   ||||| || ||||||||||||||||| || || ||||| |||||||||||  |    || ||  | ||||| |||
gtgagttcttgtctgctttctctcctcccccctctcactcactctccatctcaggtatttaaagttttaattgcacctttttctctcaaaagttttctatacagctgttaacatgtcttgtaacattttcctttgagcagCCAGAAAAGAAAAATCCAGGTTTAACTCCGATGGACTGGGTCAAGTTCATTGCGTCTGCTGTAGTTGGGCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtagatgtaattaaagtaagtaataaaatcaaatttattttgtgtggtttcagCCTGAGAAGAAAAATCCAGGTTTGACACCTATGGATTGGGTCAAGTTGTTGATATCGGCATTGGTTGGCCTG
      atgtaattaaagtaag  TA-rich tract