1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gttctcatcccgaattctacacatcactcttttctgcttatgctcctcgtatgtttgacaaatttttgacacattatgcctcttagagatcaaatatcccgaatgattctgtgaggcgagctctaatgtgatacggtattgcctgcagCTCTGTGATCTGTACGAAAACGATTCCATCTTAGATAAATTCCAGTGTTGTTGGAGTGGAGATGGTGCACACGTCGCAACTGGCTCCTACAG
species | Physcomitrella patens |
transcript | PP1S138_11V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAGCGGGTCCCGTCGCGACTCTGAAGGTTCATGAGCATTTGCGGCCGAAG CTCTGTGATCTGTACGAAAACGATTCCATCTTAGATAAATTCCAGTGTTGTEST: gi|18336162|gb|BJ168184.1|BJ168184
genomic: AAGCGGGTCCCGTCGCGACTCTGAAGGTTCATGAGCATTTGCGGCCGAAGgttctcatcc ... ttgcctgcagCTCTGTGATCTGTACGAAAACGATTCCATCTTAGATAAATTCCAGTGTTGT
EST: AAGCGGGTCCCGTCGCGACTCTGAAGGTTCATGAGCATTTGCGGCCGAAG CTCTGTGATCTGTACGAAAACGATTCCATCTTAGATAAATTCCAGTGTTGTEST: gi|37831961|gb|BJ589973.1|BJ589973
genomic: AAGCGGGTCCCGTCGCGACTCTGAAGGTTCATGAGCATTTGCGGCCGAAGgttctcatcc ... ttgcctgcagCTCTGTGATCTGTACGAAAACGATTCCATCTTAGATAAATTCCAGTGTTGT
EST: AAGCGGGTCCCGTCGCGACTCTGAAGGTTCATGAGCATTTGCGGCCGAAG CTCTGTGATCTGTACGAAAACGATTCCATCTTAGATAAATTCCAGTGTTGTEST: gi|162253176|gb|FC429112.1|FC429112
genomic: AAGCGGGTCCCGTCGCGACTCTGAAGGTTCATGAGCATTTGCGGCCGAAGgttctcatcc ... ttgcctgcagCTCTGTGATCTGTACGAAAACGATTCCATCTTAGATAAATTCCAGTGTTGT
EST: AAGCGGGTCCCGTCGCGACTCTGAAGGTTCATGAGCATTTGCGGCCGAAG CTCTGTGATCTGTA
genomic: AAGCGGGTCCCGTCGCGACTCTGAAGGTTCATGAGCATTTGCGGCCGAAGgttctcatcc ... ttgcctgcagCTCTGTGATCTGTA
atatcccgaatgattctgtgaggcgagctctaatgtgatacggtattgcctgcagCTCTGTGATCTGTACGAAAACGATTCCATCTTAGATAAATTCCAGTGTTGTTGGAGTGGAGATGGTGCACACGTCGCAACTGGCTCCTACAG
ctctaat putative branch site (score: 1)
aatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctcatcccgaattctacacatcactcttttctgcttatgctcctcgtatgtttgacaaatttttgacacattatgcctcttagagatcaaatatcccgaatgattctgtgaggcgagctctaatgtgatacggtattgcctgcagCTCTGTGATCTGTACGAAAACGATTCCATCTTAGATAAATTCCAGTGTTGTTGGAGTGGAGATGGTGCACACGTCGCAACTGGCTCCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG