1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagatcctcattcctccaaaatgactcatgtcagtatccatttgtaccctcatttaatagtggtctactggatctttgattttccaacatgtataccttgggtttgtgctattaccttagattgtggatttcatctggttgcagGTTGGTTCTGCGGATCATCACATTCATTATTTTGATGTGCGCAATTCTCATATGCCCCTGTATATGTTCAATGGGCACCGAAAAGCTGTTTCGTATGTTA
species | Physcomitrella patens |
transcript | PP1S135_17V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAAATATTTGCTGTGTGAAGTATAATCCTGGATCAAGCAGCTATGTTGCA GTTGGTTCTGCGGATCATCACATTCATTATTTTGATGTGCGCAATTCTCATEST: gi|100353725|gb|BY983279.1|BY983279
genomic: CAAATATTTGCTGTGTGAAGTATAATCCTGGATCAAGCAGCTATGTTGCAgtaagatcct ... ctggttgcagGTTGGTTCTGCGGATCATCACATTCATTATTTTGATGTGCGCAATTCTCAT
EST: CAAATATTTGCTGTGTGAAGTATAATCCTGGATCAAGCAGCTATGTTGCA GTTGGTTCTGCGGATCATCACATTCATTATTTTGATGTGCGCAATTCTCATEST: gi|162157156|gb|FC333726.1|FC333726
genomic: CAAATATTTGCTGTGTGAAGTATAATCCTGGATCAAGCAGCTATGTTGCAgtaagatcct ... ctggttgcagGTTGGTTCTGCGGATCATCACATTCATTATTTTGATGTGCGCAATTCTCAT
EST: CAAATATTTGCTGTGTGAAGTATAATCCTGGATCAAGCAGCTATGTTGCA GTTGGTTCTGCGGATCATCACATTCATTATTTTGATGTGCGCAATTCTCAT
genomic: CAAATATTTGCTGTGTGAAGTATAATCCTGGATCAAGCAGCTATGTTGCAgtaagatcct ... ctggttgcagGTTGGTTCTGCGGATCATCACATTCATTATTTTGATGTGCGCAATTCTCAT
tgtataccttgggtttgtgctattaccttagattgtggatttcatctggttgcagGTTGGTTCTGCGGATCATCACATTCATTATTTTGATGTGCGCAATTCTCATATGCCCCTGTATATGTTCAATGGGCACCGAAAAGCTGTTTCGTATGTTA
tttcatct CT-rich tract
ttagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatcctcattcctccaaaatgactcatgtcagtatccatttgtaccctcatttaatagtggtctactggatctttgattttccaacatgtataccttgggtttgtgctattaccttagattgtggatttcatctggttgcagGTTGGTTCTGCGGATCATCACATTCATTATTTTGATGTGCGCAATTCTCATATGCCCCTGTATATGTTCAATGGGCACCGAAAAGCTGTTTCGTATGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT