1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...atgaacacactaacaacatagatcgatttgaaatatgaatatgtaacttaaagtttttggaattttgtaaaagcttgagcgatctcttgttgctgttcagGCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGATTATTAGCATGCGTCAACAGCTCTATGACGCTCTGCAAGCTCGAG
species | Physcomitrella patens |
transcript | PP1S132_95V6.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGG GCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGATEST: gi|208385027|gb|DC919707.1|DC919707
genomic: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGGgtattgcttt ... tgctgttcagGCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGAT
EST: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGG GCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGATEST: gi|162173605|gb|FC349573.1|FC349573
genomic: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGGgtattgcttt ... tgctgttcagGCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGAT
EST: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGG GCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGATEST: gi|162182166|gb|FC358181.1|FC358181
genomic: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGGgtattgcttt ... tgctgttcagGCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGAT
EST: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGG GCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGATEST: gi|67726923|gb|BJ977182.1|BJ977182
genomic: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGGgtattgcttt ... tgctgttcagGCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGAT
EST: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGG GCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGATEST: gi|37831224|gb|BJ589236.1|BJ589236
genomic: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGGgtattgcttt ... tgctgttcagGCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGAT
EST: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGG GCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGATEST: gi|162196336|gb|FC375406.1|FC375406
genomic: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGGgtattgcttt ... tgctgttcagGCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGAT
EST: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGG GCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGATEST: gi|37839276|gb|BJ597284.1|BJ597284
genomic: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGGgtattgcttt ... tgctgttcagGCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGAT
EST: TGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGG GCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGATEST: gi|208400819|gb|DC925099.1|DC925099
genomic: TGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGGgtattgcttt ... tgctgttcagGCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGAT
EST: AGCCCCCCGNCTCATGGNGCAGCCATTGCAGCGACGATTCTAGCTGACGG GCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGATEST: gi|162267155|gb|FC443386.1|FC443386
genomic: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGGgtattgcttt ... tgctgttcagGCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGAT
EST: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGG GCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGATEST: gi|208350485|gb|DC926452.1|DC926452
genomic: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGGgtattgcttt ... tgctgttcagGCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGAT
EST: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGG GCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGATEST: gi|162205457|gb|FC381555.1|FC381555
genomic: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGGgtattgcttt ... tgctgttcagGCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGAT
EST: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGG GCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGATEST: gi|162196335|gb|FC375405.1|FC375405
genomic: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGGgtattgcttt ... tgctgttcagGCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGAT
EST: GCCCCCCGGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGTTGACGG GCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGATEST: gi|162173604|gb|FC349572.1|FC349572
genomic: GCCCCCC-GGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGGgtattgcttt ... tgctgttcagGCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGAT
EST: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGG GCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGATEST: gi|208366377|gb|DC947573.1|DC947573
genomic: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGGgtattgcttt ... tgctgttcagGCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGAT
EST: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGG GCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGATEST: gi|162175651|gb|FC351238.1|FC351238
genomic: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGGgtattgcttt ... tgctgttcagGCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGAT
EST: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGG GCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGATEST: gi|162263808|gb|FC438427.1|FC438427
genomic: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGGgtattgcttt ... tgctgttcagGCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGAT
EST: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGG GCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGATEST: gi|37842485|gb|BJ600493.1|BJ600493
genomic: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGGgtattgcttt ... tgctgttcagGCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGAT
EST: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTNTAGCTGACGG GCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGATEST: gi|162176138|gb|FC351087.1|FC351087
genomic: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGGgtattgcttt ... tgctgttcagGCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGAT
EST: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGG GCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGAT
genomic: AGCCCCCCGGCTCATGGTGCAGCCATTGCAGCGACGATTCTAGCTGACGGgtattgcttt ... tgctgttcagGCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGAT
acttaaagtttttggaattttgtaaaagcttgagcgatctcttgttgctgttcagGCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGATTATTAGCATGCGTCAACAGCTCTATGACGCTCTGCAAGCTCGAG
atgtaac putative branch site (score: 3)
tctcttgtt putative PPT
aattttgtaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaacacactaacaacatagatcgatttgaaatatgaatatgtaacttaaagtttttggaattttgtaaaagcttgagcgatctcttgttgctgttcagGCGTCTTTTCCAGGAATGGACGGTAGAGTTGAAGGGTATGGCAGATCGGATTATTAGCATGCGTCAACAGCTCTATGACGCTCTGCAAGCTCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT