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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attagattcgtttagcagctatgaagcttattaacttttgggtagtcgctggttcatccctagttctcatttgtcgctcatccttttccttgttttctagGTTATACATCCAACCAAGCGGGAAATCTACTTGAGTGAGACTATAGACGGATGTTGGCGTGACATTCAGGATCAGATTAACGAGGCAATTATCGCCCGCC

Basic information

species Physcomitrella patens
transcript PP1S127_125V6.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100390498|gb|BY952906.1|BY952906
EST:     CGTATCGGAGATTATTGATCGAGGTTCGAGTGGCA-GGCCTTTGTTTCAG                         GTTATACATCCAACCAAAGCGGGAAATCTACTTGAGTGAGACTATAGACGG
genomic: CGTATCGGAGATTATTGATCGAGGTTCGAGTG-CAAGGCCTTTGTTTCAGgtaatttttg ... tgttttctagGTTATACATCCAACCAA-GCGGGAAATCTACTTGAGTGAGACTATAGACGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgctggttcatccctagttctcatttgtcgctcatccttttccttgttttctagGTTATACATCCAACCAAGCGGGAAATCTACTTGAGTGAGACTATAGACGGATGTTGGCGTGACATTCAGGATCAGATTAACGAGGCAATTATCGCCCGCC
                  ttctcatttgtcgctc  CT-rich tract
                                            ttgtttt  TA-rich tract