1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ccaggtgagcttagaattccttgttagtgacacctactaatcaaactccgacaatttacacgatcctttctaactgtataagctgaatgcaaccttgcagGCTGAAAAGGAGCTACAAAAGAAGCAGAAGGCCAAATCATTTCAACAAAGCAAAGCTAAGGCCAAAGTTTCTAAGAATGCCAAGCGGTGGAACTAGATTT
species | Physcomitrella patens |
transcript | PP1S125_77V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGCTGGAAACCCTAGCTCCTACTGTAAAGGCCAAATCTAAGATGAGCAAG GCTGAAAAGGAGCTACAAAAGAAGCAGAAGGCCAAATCATTTCAACAAAGCEST: gi|18339120|gb|BJ171146.1|BJ171146
genomic: AGCTGGAAACCCTAGCTCCTACTGTAAAGGCCAAATCTAAGATGAGCAAGgtacattcac ... aaccttgcagGCTGAAAAGGAGCTACAAAAGAAGCAGAAGGCCAAATCATTTCAACAAAGC
EST: AGCTGGAAACCCTAGCTCCTACTGTAAAGGCCAAATCTAAGATGAGCAAG GCTGAAAAGGAGCTACAAAAGAAGCAGAAGGCCAAATCATTTCAACAAAGCEST: gi|162157389|gb|FC333179.1|FC333179
genomic: AGCTGGAAACCCTAGCTCCTACTGTAAAGGCCAAATCTAAGATGAGCAAGgtacattcac ... aaccttgcagGCTGAAAAGGAGCTACAAAAGAAGCAGAAGGCCAAATCATTTCAACAAAGC
EST: AGCTGGAAACCCTAGCTCCTACTGTAAAGGCCAAATCTAAGATGAGCAAG GCTGAAAAGGAGCTACAAAAGAAGCAGAAGGCCAAATCATTTCAACAAAGCEST: gi|162194105|gb|FC370280.1|FC370280
genomic: AGCTGGAAACCCTAGCTCCTACTGTAAAGGCCAAATCTAAGATGAGCAAGgtacattcac ... aaccttgcagGCTGAAAAGGAGCTACAAAAGAAGCAGAAGGCCAAATCATTTCAACAAAGC
EST: AGCTGGAAACCCTAGCTCCTACTGTAAAGGCCAAATCTAAGATGAGCAAG GCTGAAAAGGAGCTACAAAAGAAGCAGAAGGCCAAATCATTTCAACAAAGCEST: gi|162251458|gb|FC428022.1|FC428022
genomic: AGCTGGAAACCCTAGCTCCTACTGTAAAGGCCAAATCTAAGATGAGCAAGgtacattcac ... aaccttgcagGCTGAAAAGGAGCTACAAAAGAAGCAGAAGGCCAAATCATTTCAACAAAGC
EST: AGCTGGAAACCCTAGCTCCTACTGTAAAGGCCAAATCTAAGATGAGCAAG GCTGAAAAGGAGCTACAAAAGAAGCAGAAGGCCAAATCATTTCAACAAAGCEST: gi|162250498|gb|FC428401.1|FC428401
genomic: AGCTGGAAACCCTAGCTCCTACTGTAAAGGCCAAATCTAAGATGAGCAAGgtacattcac ... aaccttgcagGCTGAAAAGGAGCTACAAAAGAAGCAGAAGGCCAAATCATTTCAACAAAGC
EST: AGCTGGAAACCCTAGCTCCTACTGTAAAGGCCAAATCTAAGATGAGCAAG GCTGAAAAGGAGCTACAAAAGAAGCAGAAGGCCAAATCATTTCAACAAAGCEST: gi|162176697|gb|FC352542.1|FC352542
genomic: AGCTGGAAACCCTAGCTCCTACTGTAAAGGCCAAATCTAAGATGAGCAAGgtacattcac ... aaccttgcagGCTGAAAAGGAGCTACAAAAGAAGCAGAAGGCCAAATCATTTCAACAAAGC
EST: AGCTGGAAACCCTAGCTCCTACTGTAAAGGCCAAATCTAAGATGAGCAAG GCTGAAAAGGAGCTACAAAAGAAGCAGAAGGCCAAATCATTTCAACAAAGC
genomic: AGCTGGAAACCCTAGCTCCTACTGTAAAGGCCAAATCTAAGATGAGCAAGgtacattcac ... aaccttgcagGCTGAAAAGGAGCTACAAAAGAAGCAGAAGGCCAAATCATTTCAACAAAGC
ctccgacaatttacacgatcctttctaactgtataagctgaatgcaaccttgcagGCTGAAAAGGAGCTACAAAAGAAGCAGAAGGCCAAATCATTTCAACAAAGCAAAGCTAAGGCCAAAGTTTCTAAGAATGCCAAGCGGTGGAACTAGATTT
ttctaac putative branch site (score: 11)
acaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaggtgagcttagaattccttgttagtgacacctactaatcaaactccgacaatttacacgatcctttctaactgtataagctgaatgcaaccttgcagGCTGAAAAGGAGCTACAAAAGAAGCAGAAGGCCAAATCATTTCAACAAAGCAAAGCTAAGGCCAAAGTTTCTAAGAATGCCAAGCGGTGGAACTAGATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA