1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacagcaccaaagcattgtattgtcttgaacttagttcaaatttgttttgaaaacgctagatttgtctcccaaaatattacattaccgaacactcattctaatcttgtccgtagGTAGGAGATATGGAGAAGCTTGGCATCTATGAGGCATTCAAGGTGAAGCAGGCGGTTCTAATGTCTGCTACTGAAGCCTCCGAAATGATCCTGCGCGTGG
species | Physcomitrella patens |
transcript | PP1S116_55V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTCACTCAGCAGATGGTTGTAGGTCCGGCATTGACATCATATCTGGAAAG GTAGGAGATATGGAGAAGCTTGGCATCTATGAGGCATTCAAGGTGAAGCAGEST: gi|162184969|gb|FC362415.1|FC362415
genomic: CTCACTCAGCAGATGGTTGTAGGTCCGGCATTGACATCATATCTGGAAAGgtacagcacc ... ttgtccgtagGTAGGAGATATGGAGAAGCTTGGCATCTATGAGGCATTCAAGGTGAAGCAG
EST: CTCACTCAGCAGATGGTTGTAGGTCCGGCATTGACATCATATCTGGAAAG GTAGGAGATATGGAGAAGCTTGGCATCTATGAGGCATTCAAGGTGAAGCAGEST: gi|162276242|gb|FC452596.1|FC452596
genomic: CTCACTCAGCAGATGGTTGTAGGTCCGGCATTGACATCATATCTGGAAAGgtacagcacc ... ttgtccgtagGTAGGAGATATGGAGAAGCTTGGCATCTATGAGGCATTCAAGGTGAAGCAG
EST: CTCACTCAGCAGATGGTTGTAGGTCCGGCATTGACATCATATCTGGAAAG GTAGGAGATATGGAGAAGCTTGGCATCTATGAGGCATTCAAGGTGAAGCAG
genomic: CTCACTCAGCAGATGGTTGTAGGTCCGGCATTGACATCATATCTGGAAAGgtacagcacc ... ttgtccgtagGTAGGAGATATGGAGAAGCTTGGCATCTATGAGGCATTCAAGGTGAAGCAG
gatttgtctcccaaaatattacattaccgaacactcattctaatcttgtccgtagGTAGGAGATATGGAGAAGCTTGGCATCTATGAGGCATTCAAGGTGAAGCAGGCGGTTCTAATGTCTGCTACTGAAGCCTCCGAAATGATCCTGCGCGTGG
ttctaat putative branch site (score: 5)
tcttgtcc CT-rich tract
aaaatattacatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagcaccaaagcattgtattgtcttgaacttagttcaaatttgttttgaaaacgctagatttgtctcccaaaatattacattaccgaacactcattctaatcttgtccgtagGTAGGAGATATGGAGAAGCTTGGCATCTATGAGGCATTCAAGGTGAAGCAGGCGGTTCTAATGTCTGCTACTGAAGCCTCCGAAATGATCCTGCGCGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC