1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacacatttcatagttgtccttattttggacgaactcgtgacgtttttgttgaatctgagtgatcaaatgtgtaagtgcaagtatggcggatgtttctgtaaacttcaaattgccgctggtactaaacccatctagtgcgtgcttggtttccttccagCAAGTGTTGAAGGGACAGCAAGTGGCCGCAGTCGGTGCTACTGGACGTGCTACAGGCCCACATTTACACTTCGAAG
species | Physcomitrella patens |
transcript | PP1S100_112V6.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGTAACTAGATATGCACACTGCTGTGCCATCCATTCCCGCATTGGACAG CAAGTGTTGAAGGGACAGCAAGTGGCCGCAGTCGGTGCTACTGGACGTGCTEST: gi|37832438|gb|BJ590450.1|BJ590450
genomic: TTGTAACTAGATATGCACACTGCTGTGCCATCCATTCCCGCATTGGACAGgtacacattt ... ttccttccagCAAGTGTTGAAGGGACAGCAAGTGGCCGCAGTCGGTGCTACTGGACGTGCT
EST: TAGATATGCACACTGCTGTGCCATCCATTCCCGCATTGGACAG CAAGTGTTGAAGGGACAGCAAGTGGCCGCAGTCGGTGCTACTGGACGTGCTEST: gi|162274326|gb|FC450294.1|FC450294
genomic: TAGATATGCACACTGCTGTGCCATCCATTCCCGCATTGGACAGgtacacattt ... ttccttccagCAAGTGTTGAAGGGACAGCAAGTGGCCGCAGTCGGTGCTACTGGACGTGCT
EST: TTGTAACTAGATATGCACACTGCTGTGCCATCCATTCCCGCATTGGACAG CAAGTGTTGAAGGGACAGCAAGTGGCCGCAGTCGGTGCTACTGGACGTGCTEST: gi|67725072|gb|BJ975331.1|BJ975331
genomic: TTGTAACTAGATATGCACACTGCTGTGCCATCCATTCCCGCATTGGACAGgtacacattt ... ttccttccagCAAGTGTTGAAGGGACAGCAAGTGGCCGCAGTCGGTGCTACTGGACGTGCT
EST: TTGTAACTAGATATGCACACTGCTGTGCCATCCATTCCCGCATTGGACAG CAAGTGTTGAAGGGACAGCAAGTGGCCGCAGTCGGTGCTACTGGACGTGCT
genomic: TTGTAACTAGATATGCACACTGCTGTGCCATCCATTCCCGCATTGGACAGgtacacattt ... ttccttccagCAAGTGTTGAAGGGACAGCAAGTGGCCGCAGTCGGTGCTACTGGACGTGCT
cttcaaattgccgctggtactaaacccatctagtgcgtgcttggtttccttccagCAAGTGTTGAAGGGACAGCAAGTGGCCGCAGTCGGTGCTACTGGACGTGCTACAGGCCCACATTTACACTTCGAAG
tactaaa putative branch site (score: 1)
cttggtttccttcc putative PPT
tactaaa TA-rich tract