1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agaagggtagttgtttgtatttatttttatttcctccttttggtgtgagatgctgttagctgggtatgcgctcacactagagcttggaatttctgcacagGAAAGGGTTGGTGTTGAGTAGGGAGGTCGAGGGGTGAATTTGCAGCAATCGATTCCTGACGTGTGAAGACAGCGGCTGAAACGGATCTTGAACTTCTGTA
species | Physcomitrella patens |
transcript | PP1S9_356V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGTGTGAATGCGGATGAGCGTTGCCAGCGAGGTGGAGATACGTGACAGG GAAAGGGTTGGTGTTGAGTAGGGAGGTCGAGGGGTGAATTTGCAGCAATCGEST: gi|100426953|gb|BY977447.1|BY977447
genomic: GTGAGTGAATGCGGATGAGCGTTGCCAGCGAGGTGGAGATACGTGACAGGgtatgctggc ... ttctgcacagGAAAGGGTTGGTGTTGAGTAGGGAGGTCGAGGGGTGAATTTGCAGCAATCG
EST: GTGAGTGAATGCGGATGAGCGTTGCCAGCGAGGTGGAGATACGTGACAGG GAAAGGGTTGGTGTTGAGTAGGGAGGTCGAGGGGTGAATTTGCAGCAACCGEST: gi|162194715|gb|FC371562.1|FC371562
genomic: GTGAGTGAATGCGGATGAGCGTTGCCAGCGAGGTGGAGATACGTGACAGGgtatgctggc ... ttctgcacagGAAAGGGTTGGTGTTGAGTAGGGAGGTCGAGGGGTGAATTTGCAGCAATCG
EST: GTGAGTGAATGCGGATGAGCGTTGCCAGCGAGGTGGAGATACGTGACAGG GAAAGGGTTGGTGTTGAGTAGGGAGGTCGAGGGGTGAATTTGCAGCAATCGEST: gi|100448276|gb|CJ972575.1|CJ972575
genomic: GTGAGTGAATGCGGATGAGCGTTGCCAGCGAGGTGGAGATACGTGACAGGgtatgctggc ... ttctgcacagGAAAGGGTTGGTGTTGAGTAGGGAGGTCGAGGGGTGAATTTGCAGCAATCG
EST: GTGAGTGAATGCGGATGANCGTTGCCAGCGAGGTGGAGATACGTGACAGG GAAAGGGTTGGTGTTGAGTAGGGAGGTCGAGGGGTGAATTTGCAGCAATCGEST: gi|100447965|gb|CJ972264.1|CJ972264
genomic: GTGAGTGAATGCGGATGAGCGTTGCCAGCGAGGTGGAGATACGTGACAGGgtatgctggc ... ttctgcacagGAAAGGGTTGGTGTTGAGTAGGGAGGTCGAGGGGTGAATTTGCAGCAATCG
EST: GTGAGTGAATGCGGATGAGCGTTGCCAGCGAGGTGGAGATACGTGACAGG GAAAGGGTTGGTGTTGAGTAGGGAGGTCGAGGGGTGAATTTGCAGCAATCGEST: gi|162196933|gb|FC375184.1|FC375184
genomic: GTGAGTGAATGCGGATGAGCGTTGCCAGCGAGGTGGAGATACGTGACAGGgtatgctggc ... ttctgcacagGAAAGGGTTGGTGTTGAGTAGGGAGGTCGAGGGGTGAATTTGCAGCAATCG
EST: GTGAGTGAATGCGGATGAGCGTTGCCAGCGAGGTGGAGATACGTGACAGG GAAAGGGTTGGTGTTGAGTAGGGAGGTCGAGGGGTGAATTTGCAGCAATCGEST: gi|18350746|gb|BJ182797.1|BJ182797
genomic: GTGAGTGAATGCGGATGAGCGTTGCCAGCGAGGTGGAGATACGTGACAGGgtatgctggc ... ttctgcacagGAAAGGGTTGGTGTTGAGTAGGGAGGTCGAGGGGTGAATTTGCAGCAATCG
EST: GTGAGTGAATGCGGATGAGCGTTGCCAGCGAGGTGGAGATACGTGACAGG GAAAGGGTTGGTGTTGAGTAGGGAGGTCGAGGGGTGAATTTGCAGCAATCGEST: gi|100383772|gb|BY969301.1|BY969301
genomic: GTGAGTGAATGCGGATGAGCGTTGCCAGCGAGGTGGAGATACGTGACAGGgtatgctggc ... ttctgcacagGAAAGGGTTGGTGTTGAGTAGGGAGGTCGAGGGGTGAATTTGCAGCAATCG
EST: GTGAGTGAATGCGGATGAGCGTTGCCAGCGAGGTGGAGATACGTGACAGG GAAAGGGTTGGTGTTGAGTAGGGAGGTCGAGGGGTGAATTTGCAGCAATCG
genomic: GTGAGTGAATGCGGATGAGCGTTGCCAGCGAGGTGGAGATACGTGACAGGgtatgctggc ... ttctgcacagGAAAGGGTTGGTGTTGAGTAGGGAGGTCGAGGGGTGAATTTGCAGCAATCG
tgagatgctgttagctgggtatgcgctcacactagagcttggaatttctgcacagGAAAGGGTTGGTGTTGAGTAGGGAGGTCGAGGGGTGAATTTGCAGCAATCGATTCCTGACGTGTGAAGACAGCGGCTGAAACGGATCTTGAACTTCTGTA
cgctcac putative branch site (score: 3)
tttctgc putative PPT
aatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaagggtagttgtttgtatttatttttatttcctccttttggtgtgagatgctgttagctgggtatgcgctcacactagagcttggaatttctgcacagGAAAGGGTTGGTGTTGAGTAGGGAGGTCGAGGGGTGAATTTGCAGCAATCGATTCCTGACGTGTGAAGACAGCGGCTGAAACGGATCTTGAACTTCTGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA