1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caatgtcgaacttgggtatcaagggttttagcaatcaaggatattgaacatatttttagtgcttttcgtttgagcttcgttaaacatgagttcttcgcagGTGCAAGAATTTGAAGAAAGCAGCGCTCGGTAGGATGTGCACTGTGATGAAACGTGTTGGTCCTAGTTTGGCATACTTGGAGCAGGTTAGGCAGCACATG
species | Physcomitrella patens |
transcript | PP1S9_29V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTGCCAAGGATTACGTACGTTTGTTGAAATATGGCGACTCGCTTTATAG GTGCAAGAATTTGAAGAAAGCAGCGCTCGGTAGGATGTGCACTGTGATGAAEST: gi|162189609|gb|FC365831.1|FC365831
genomic: ATTGCCAAGGATTACGTACGTTTGTTGAAATATGGCGACTCGCTTTATAGgtcagtttta ... ttcttcgcagGTGCAAGAATTTGAAGAAAGCAGCGCTCGGTAGGATGTGCACTGTGATGAA
EST: ATTGCCAAGGATTACGTACGTTTGTTGAAATATGGCGACTCGCTTTATAG GTGCAAGAATTTGAAGAAAGCAGCGCTCGGTAGGATGTGCACTGTGATGAA
genomic: ATTGCCAAGGATTACGTACGTTTGTTGAAATATGGCGACTCGCTTTATAGgtcagtttta ... ttcttcgcagGTGCAAGAATTTGAAGAAAGCAGCGCTCGGTAGGATGTGCACTGTGATGAA
gaacatatttttagtgcttttcgtttgagcttcgttaaacatgagttcttcgcagGTGCAAGAATTTGAAGAAAGCAGCGCTCGGTAGGATGTGCACTGTGATGAAACGTGTTGGTCCTAGTTTGGCATACTTGGAGCAGGTTAGGCAGCACATG
ttcttcgc CT-rich tract
tatttttagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatgtcgaacttgggtatcaagggttttagcaatcaaggatattgaacatatttttagtgcttttcgtttgagcttcgttaaacatgagttcttcgcagGTGCAAGAATTTGAAGAAAGCAGCGCTCGGTAGGATGTGCACTGTGATGAAACGTGTTGGTCCTAGTTTGGCATACTTGGAGCAGGTTAGGCAGCACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG