1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagagcaatagggattcagtttgaaactgatttaagtgtgaaaacactattcagctatcttgtaataaattaaagttttgaattctctgtaatccctttcattttgcggctcttcaagactcggatcttattgttacttattttaatatttacgcagGAGCAACACCGAAATCTGTTCTGGAGCTGATGAACGTGAAAGACCTTACCCTGGCTCATGTGAAGAGCCACTTACAG
species | Physcomitrella patens |
transcript | PP1S9_234V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CNTGCATGCATACTTTGTTCAAGCGGTGGAGCTCCTTGGTGGCCATGAAA GAGCAACACCGAAATCTGTTCTGGAGCTGATGAACGTGAAAGACCTTACCCEST: gi|162255475|gb|FC431889.1|FC431889
genomic: CCTGCATGCATACTTTGTTCAAGCGGTGGAGCTCCTTGGTGGCCATGAAAgtaagagcaa ... atttacgcagGAGCAACACCGAAATCTGTTCTGGAGCTGATGAACGTGAAAGACCTTACCC
EST: CCTGCATGCATAC-TTGTTCAAGCGGTGGAGCTCCTTGGTGGCCATGAAA GAGCAACACCGAAATCTGTTCTGGAGCTGATGAACGTGAAAGACCTTACCC
genomic: CCTGCATGCATACTTTGTTCAAGCGGTGGAGCTCCTTGGTGGCCATGAAAgtaagagcaa ... atttacgcagGAGCAACACCGAAATCTGTTCTGGAGCTGATGAACGTGAAAGACCTTACCC
tttgcggctcttcaagactcggatcttattgttacttattttaatatttacgcagGAGCAACACCGAAATCTGTTCTGGAGCTGATGAACGTGAAAGACCTTACCCTGGCTCATGTGAAGAGCCACTTACAG
ttttaat putative branch site (score: 13)
atcttattgttactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagcaatagggattcagtttgaaactgatttaagtgtgaaaacactattcagctatcttgtaataaattaaagttttgaattctctgtaatccctttcattttgcggctcttcaagactcggatcttattgttacttattttaatatttacgcagGAGCAACACCGAAATCTGTTCTGGAGCTGATGAACGTGAAAGACCTTACCCTGGCTCATGTGAAGAGCCACTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA