1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtattgtcttgttgcttcaattttacttgagcatgaaaataaacttcgatcctcgtagttgtaggtgaattgcactcaatggcatgccgtattttgcagctgttggccgtaggaatgcacaattgggtacgcgttggtttcactaatctaaatgagtcatcatctgttttttcagAGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTATGACATTGTCCGTGCTGAAGTTGCTGCTAAGACTGCCAAGGGTTCATCAA
species | Physcomitrella patens |
transcript | PP1S98_36V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGGGAGTTCCA-NGCAC-TNTGAAATCTGATGTNGGCGGCNACA-TTCG AGACTGGATGCCAAGTACGGCAGTGATCCATCGGCGAACAGCCTGCTGTATEST: gi|208346548|gb|DC916814.1|DC916814
genomic: TTGGGAGTTCCATGGCACTTGTGAAATCTGATGTTGGCGGCAACATTTCGgtattgtctt ... gttttttcagAGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTAT
EST: TTGGGAGTTCCATGGCACTTGTGAAATCTGATGTTGGCGGCAACATTTCG AGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTATEST: gi|208366308|gb|DC943840.1|DC943840
genomic: TTGGGAGTTCCATGGCACTTGTGAAATCTGATGTTGGCGGCAACATTTCGgtattgtctt ... gttttttcagAGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTAT
EST: TGATGTTGGCGGCAACATTTCG AGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTATEST: gi|208363377|gb|DC946975.1|DC946975
genomic: TGATGTTGGCGGCAACATTTCGgtattgtctt ... gttttttcagAGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTAT
EST: TTGGGAGTTCCATGGCACTTGTGAAATCTGATGTTGGCGGCAACATTTCG AGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTATEST: gi|208347378|gb|DC925346.1|DC925346
genomic: TTGGGAGTTCCATGGCACTTGTGAAATCTGATGTTGGCGGCAACATTTCGgtattgtctt ... gttttttcagAGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTAT
EST: AAATCTGATGTTGGCGGCAACATTTCG AGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTATEST: gi|67698630|gb|BJ958863.1|BJ958863
genomic: AAATCTGATGTTGGCGGCAACATTTCGgtattgtctt ... gttttttcagAGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTAT
EST: TTGGGAGTTCCATGGCACTTGTGAAATCTGATGTTGGCGGCAACATTTCG AGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTATEST: gi|208365541|gb|DC954782.1|DC954782
genomic: TTGGGAGTTCCATGGCACTTGTGAAATCTGATGTTGGCGGCAACATTTCGgtattgtctt ... gttttttcagAGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTAT
EST: TTGGGAGTTCCATGGCACTTGTGAAATCTGATGTTGGCGGCAACATTTCG AGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTATEST: gi|67507998|gb|BJ940872.1|BJ940872
genomic: TTGGGAGTTCCATGGCACTTGTGAAATCTGATGTTGGCGGCAACATTTCGgtattgtctt ... gttttttcagAGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTAT
EST: TTGGGAGTTCCATGGCACTTGTGAAATCTGATGTTGGCGGCAACATTTCG AGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTATEST: gi|208345900|gb|DC921085.1|DC921085
genomic: TTGGGAGTTCCATGGCACTTGTGAAATCTGATGTTGGCGGCAACATTTCGgtattgtctt ... gttttttcagAGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTAT
EST: TTGGGAGTTCCATGGCACTTGTGAAATNTGATGTTGGCNGCNACATTTCG AGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTATEST: gi|208373612|gb|DC952437.1|DC952437
genomic: TTGGGAGTTCCATGGCACTTGTGAAATCTGATGTTGGCGGCAACATTTCGgtattgtctt ... gttttttcagAGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTAT
EST: TT-GGAGTTCCATGGCACTTGTGAAATCTGATGTTGGCGGCANCATTTCG AGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTATEST: gi|208393705|gb|DC946055.1|DC946055
genomic: TTGGGAGTTCCATGGCACTTGTGAAATCTGATGTTGGCGGCAACATTTCGgtattgtctt ... gttttttcagAGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTAT
EST: TGATGTTGGCGGCAACATTTCG AGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTATEST: gi|208353455|gb|DC946319.1|DC946319
genomic: TGATGTTGGCGGCAACATTTCGgtattgtctt ... gttttttcagAGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTAT
EST: CATGGCACTTG-GNAATTTGATGTNGGCGGCANCATTTCG AGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCNTGCTGTATEST: gi|208377562|gb|DC922665.1|DC922665
genomic: CATGGCACTTGTGAAATCTGATGTTGGCGGCAACATTTCGgtattgtctt ... gttttttcagAGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTAT
EST: CTGATGTTGGCGGCAACATTTCG AGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTAT
genomic: CTGATGTTGGCGGCAACATTTCGgtattgtctt ... gttttttcagAGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTAT
aattgggtacgcgttggtttcactaatctaaatgagtcatcatctgttttttcagAGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTATGACATTGTCCGTGCTGAAGTTGCTGCTAAGACTGCCAAGGGTTCATCAA
tcatctgttttttc CT-rich tract
taatctaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgtcttgttgcttcaattttacttgagcatgaaaataaacttcgatcctcgtagttgtaggtgaattgcactcaatggcatgccgtattttgcagctgttggccgtaggaatgcacaattgggtacgcgttggtttcactaatctaaatgagtcatcatctgttttttcagAGACTGGATGCCAAGTACGACAGTGATCCATCGGCGAACAGCCTGCTGTATGACATTGTCCGTGCTGAAGTTGCTGCTAAGACTGCCAAGGGTTCATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT