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...ttcccaattgatatgaaatagttctacgtgcggctgttagtttacttttgttcactctctatcgcatgttttgagcttactgtcatggttttttgtgcagCGTTCCAGAAAGTGTTGTCATGGCTGCTATATTGCGCAAGTACATTGTGGTGGGAGGAGGTGTAGCTGGA
species | Physcomitrella patens |
transcript | PP1S90_28V6.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTCTTCATGTGCAATTTGGTGGAGTATTGAAGAATAGGTGCAAAGATCA CGTTCCAGAAAGTGTTGTCATGGCTGCTATATTGCGCAAGTACATTGTGGTEST: gi|18365163|gb|BJ197237.1|BJ197237
genomic: CCTCTTCATGTGCAATTTGGTGGAGTATTGAAGAATAGGTGCAAAGATCAgtaggtttta ... ttttgtgcagCGTTCCAGAAAGTGTTGTCATGGCTGCTATATTGCGCAAGTACATTGTGGT
EST: CCTCTTCATGTGCAATTTGGTGGAGTATTGAAGAATAGGTGCAAAGATCA CGTTCCAGAAAGTGTTGTCATGGCTGCTATATTGCGCAAGTACATTGTGGTEST: gi|18356191|gb|BJ188250.1|BJ188250
genomic: CCTCTTCATGTGCAATTTGGTGGAGTATTGAAGAATAGGTGCAAAGATCAgtaggtttta ... ttttgtgcagCGTTCCAGAAAGTGTTGTCATGGCTGCTATATTGCGCAAGTACATTGTGGT
EST: CCTCTTCATGTGCAATTTGGTGGAGTATTGAAGAATAGGTGCAAAGATCA CGTTCCAGAAAGTGTTGTCATGGCTGCTATATTGCGCAAGTACATTGTGGTEST: gi|18360912|gb|BJ192976.1|BJ192976
genomic: CCTCTTCATGTGCAATTTGGTGGAGTATTGAAGAATAGGTGCAAAGATCAgtaggtttta ... ttttgtgcagCGTTCCAGAAAGTGTTGTCATGGCTGCTATATTGCGCAAGTACATTGTGGT
EST: CCTCTTCATGTGCAATTTGGTGGAGTATTGAAGAATAGGTGCAAAGATCA CGTTCCAGAAAGTGTTGTCATGGCTGCTATATTGCGCAAGTACATTGTGGTEST: gi|18364385|gb|BJ196458.1|BJ196458
genomic: CCTCTTCATGTGCAATTTGGTGGAGTATTGAAGAATAGGTGCAAAGATCAgtaggtttta ... ttttgtgcagCGTTCCAGAAAGTGTTGTCATGGCTGCTATATTGCGCAAGTACATTGTGGT
EST: CCTCTTCATGTGCAATTTGGTGGAGTATTGAAGAATAGGTGCAAAGATCA CGTTCCAGAAAGTGTTGTCATGGCTGCTATATTGCGCAAGTACATTGTGGTEST: gi|18369448|gb|BJ201535.1|BJ201535
genomic: CCTCTTCATGTGCAATTTGGTGGAGTATTGAAGAATAGGTGCAAAGATCAgtaggtttta ... ttttgtgcagCGTTCCAGAAAGTGTTGTCATGGCTGCTATATTGCGCAAGTACATTGTGGT
EST: CCTCTTCATGTGCAATTTGGTGGAGTATTGAAGAATAGGTGCAAAGATCA CGTTCCAGAAAGTGTTGTCATGGCTGCTATATTGCGCAAGTACATTGTGGT
genomic: CCTCTTCATGTGCAATTTGGTGGAGTATTGAAGAATAGGTGCAAAGATCAgtaggtttta ... ttttgtgcagCGTTCCAGAAAGTGTTGTCATGGCTGCTATATTGCGCAAGTACATTGTGGT
ttttgttcactctctatcgcatgttttgagcttactgtcatggttttttgtgcagCGTTCCAGAAAGTGTTGTCATGGCTGCTATATTGCGCAAGTACATTGTGGTGGGAGGAGGTGTAGCTGGA
agcttac putative branch site (score: 30)
ttttttgt putative PPT
ttttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcccaattgatatgaaatagttctacgtgcggctgttagtttacttttgttcactctctatcgcatgttttgagcttactgtcatggttttttgtgcagCGTTCCAGAAAGTGTTGTCATGGCTGCTATATTGCGCAAGTACATTGTGGTGGGAGGAGGTGTAGCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA